TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-C8-A26V-01A	TCGA-C8-A26V	COG6\|MAPK8	COG6	MAPK8	13	10	1	1	7	5	4	0.31	40235018	49639236	tier1	Out-of-frame	3983	NA	0.38655
ACC	TCGA-PK-A5HB-01A	TCGA-PK-A5HB	PAPSS2\|MINPP1	PAPSS2	MINPP1	10	10	1	1	247	125	116	0.097	89487246	89311839	tier1	Out-of-frame	12263	NA	0.34987
BRCA	TCGA-AO-A0JL-01A	TCGA-AO-A0JL	PAPSS2\|MINPP1	PAPSS2	MINPP1	10	10	1	1	2	1	1	0.097	89419765	89311839	tier4	Out-of-frame	12262	NA	0.34987
KIRP	TCGA-DW-7841-01A	TCGA-DW-7841	RICTOR\|MINPP1	RICTOR	MINPP1	5	10	-1	1	6	6	6	0.006	38991051	89311839	tier1	Out-of-frame	14682	NA	0
BRCA	TCGA-A2-A1FW-01A	TCGA-A2-A1FW	HECTD2\|GLRX3	HECTD2	GLRX3	10	10	1	1	2	2	1	0.019	93170333	131978377	tier2	CDS-3UTR	7681	NA	0.35779
BRCA	TCGA-BH-A1EY-01A	TCGA-BH-A1EY	ADD3\|XPNPEP1	ADD3	XPNPEP1	10	10	1	-1	19	19	18	4.8	111768057	111652833	tier1	5UTR-CDS	499	NA	0.36206
HNSC	TCGA-CQ-6229-01A	TCGA-CQ-6229	KRT14\|CYP2C18	KRT14	CYP2C18	17	10	-1	1	2	1	1	0.041	39738531	96447527	tier3	3UTR-CDS	9129	NA	0.36214
PRAD	TCGA-V1-A9ZK-01A	TCGA-V1-A9ZK	CUL2\|CYP2C18	CUL2	CYP2C18	10	10	-1	1	8	9	8	0.009	35379358	96447527	tier1	5UTR-CDS	4433	NA	0.36418
BRCA	TCGA-AC-A62V-01A	TCGA-AC-A62V	DLGAP4\|TUBD1	DLGAP4	TUBD1	20	17	1	-1	2	3	3	0.44	35091002	57941208	tier3	In-frame	4898	NA	0.36771
BRCA	TCGA-BH-A0HB-01A	TCGA-BH-A0HB	TRIM37\|TUBD1	TRIM37	TUBD1	17	17	-1	-1	9	16	16	1.4	57181654	57937785	tier1	Out-of-frame	18648	NA	0
CESC	TCGA-EK-A3GJ-01A	TCGA-EK-A3GJ	VMP1\|TUBD1	VMP1	TUBD1	17	17	1	-1	6	9	8	0.19	57895134	57944110	tier1	Out-of-frame	19600	NA	0
HNSC	TCGA-BA-A6DJ-01A	TCGA-BA-A6DJ	VMP1\|TUBD1	VMP1	TUBD1	17	17	1	-1	10	9	9	0.19	57895134	57955695	tier1	Out-of-frame	19599	NA	0
BRCA	TCGA-EW-A1PB-01A	TCGA-EW-A1PB	C1orf132\|RPS6KB1	C1orf132	RPS6KB1	1	17	-1	1	2	5	5	1.3	208041271	57987923	tier2	NA	2589	non-validated	0
BRCA	TCGA-A1-A0SN-01A	TCGA-A1-A0SN	DDX42\|RPS6KB1	DDX42	RPS6KB1	17	17	1	1	64	55	52	0.22	61882535	57987923	tier1	5UTR-CDS	4665	NA	0.38392
CESC	TCGA-C5-A907-01A	TCGA-C5-A907	BCAS3\|RPS6KB1	BCAS3	RPS6KB1	17	17	1	1	20	42	39	0.2	58755275	57990045	tier1	5UTR-CDS	1993	NA	0.3827
BRCA	TCGA-C8-A12Q-01A	TCGA-C8-A12Q	RNF169\|CBX1	RNF169	CBX1	11	17	1	-1	15	9	7	0.005	74528759	46154403	tier1	CDS-5UTR	14782	non-validated	0
LIHC	TCGA-BC-A3KG-01A	TCGA-BC-A3KG	PPP6R2\|CBX1	PPP6R2	CBX1	22	17	1	-1	9	9	8	0.028	50845304	46152462	tier1	In-frame	13448	NA	0.36391
STAD	TCGA-BR-8286-01A	TCGA-BR-8286	PRR15L\|CBX1	PRR15L	CBX1	17	17	-1	-1	2	47	33	0.12	46035023	46154403	tier2	5UTR-5UTR	13623	NA	0.36391
UCEC	TCGA-EY-A4KR-01A	TCGA-EY-A4KR	SCRN2\|CBX1	SCRN2	CBX1	17	17	-1	-1	21	18	16	1.9	45918036	46152462	tier1	In-frame	15440	NA	0
LUAD	TCGA-50-6590-01A	TCGA-50-6590	SEC14L1\|GALK1	SEC14L1	GALK1	17	17	1	-1	2	3	1	3.3	75139741	73760167	tier3	In-frame	15491	NA	0

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