Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | TSKU|SFRP4 | TSKU | SFRP4 | 11 | 7 | 1 | -1 | 35 | 47 | 41 | 1.3 | 76494448 | 37954055 | tier1 | 5UTR-CDS | 18778 | NA | 0 |
| LUSC | TCGA-68-A59I-01A | TCGA-68-A59I | JAZF1|SFRP4 | JAZF1 | SFRP4 | 7 | 7 | -1 | -1 | 4 | 4 | 3 | 0.094 | 28031528 | 37966376 | tier1 | NA | 8490 | NA | 0.35584 |
| BRCA | TCGA-AO-A12E-01A | TCGA-AO-A12E | GALNT11|PRKAG2 | GALNT11 | PRKAG2 | 7 | 7 | 1 | -1 | 15 | 16 | 16 | 1.1 | 151810483 | 151262971 | tier1 | In-frame | 6920 | NA | 0.35439 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | SMARCD3|PRKAG2 | SMARCD3 | PRKAG2 | 7 | 7 | -1 | -1 | 3 | 2 | 1 | 0.26 | 150972200 | 151329224 | tier2 | In-frame | 16394 | NA | 0 |
| SKCM | TCGA-BF-A3DJ-01A | TCGA-BF-A3DJ | EIF4G1|AEBP1 | EIF4G1 | AEBP1 | 3 | 7 | 1 | 1 | 2 | 1 | 1 | 100 | 184045091 | 44143960 | tier3 | NA | 5461 | NA | 0.37416 |
| PRAD | TCGA-ZG-A9L6-01A | TCGA-ZG-A9L6 | C7orf44|GCK | C7orf44 | GCK | 7 | 7 | -1 | -1 | 5 | 3 | 3 | 0.83 | 43769028 | 44193062 | tier1 | 5UTR-CDS | 2788 | NA | 0 |
| LUSC | TCGA-96-7544-01A | TCGA-96-7544 | KIAA1432|SLC1A1 | KIAA1432 | SLC1A1 | 9 | 9 | 1 | 1 | 2 | 1 | 1 | 3.1 | 5720750 | 4544567 | tier2 | Out-of-frame | 8882 | NA | 0.35671 |
| MESO | TCGA-SH-A7BC-01A | TCGA-SH-A7BC | VLDLR|SLC1A1 | VLDLR | SLC1A1 | 9 | 9 | 1 | 1 | 7 | 12 | 12 | 0.48 | 2622271 | 4544567 | tier1 | In-frame | 19585 | NA | 0 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | ZCCHC6|ASPN | ZCCHC6 | ASPN | 9 | 9 | -1 | -1 | 2 | 1 | 1 | 0.5 | 88934499 | 95237209 | tier4 | CDS-5UTR | 20166 | NA | 0 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | GNA14|TNFSF8 | GNA14 | TNFSF8 | 9 | 9 | -1 | -1 | 2 | 1 | 1 | 2 | 80262586 | 117680418 | tier3 | Out-of-frame | 7171 | NA | 0.36541 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | CDK5RAP2|ENG | CDK5RAP2 | ENG | 9 | 9 | -1 | -1 | 4 | 4 | 3 | 0.68 | 123280705 | 130588951 | tier1 | In-frame | 3429 | NA | 0.36793 |
| HNSC | TCGA-CV-A45T-01A | TCGA-CV-A45T | DENND1A|ENG | DENND1A | ENG | 9 | 9 | -1 | -1 | 5 | 5 | 3 | 0.16 | 126319849 | 130581111 | tier1 | In-frame | 4693 | NA | 0.36677 |
| BLCA | TCGA-GD-A3OS-01A | TCGA-GD-A3OS | TRUB2|KCNT1 | TRUB2 | KCNT1 | 9 | 9 | -1 | 1 | 36 | 36 | 33 | 1.1 | 131083878 | 138641944 | tier1 | Out-of-frame | 18745 | NA | 0 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | CAMSAP1|KCNT1 | CAMSAP1 | KCNT1 | 9 | 9 | -1 | 1 | 2 | 4 | 4 | 0.031 | 138758302 | 138656877 | tier2 | In-frame | 2936 | NA | 0.35101 |
| BRCA | TCGA-OL-A5RY-01A | TCGA-OL-A5RY | ACO1|TYRP1 | ACO1 | TYRP1 | 9 | 9 | 1 | 1 | 9 | 17 | 14 | 0.36 | 32384733 | 12693912 | tier1 | 5UTR-5UTR | 271 | NA | 0.3502 |
| BRCA | TCGA-A2-A0SX-01A | TCGA-A2-A0SX | C9orf150|TYRP1 | C9orf150 | TYRP1 | 9 | 9 | 1 | 1 | 2 | 5 | 5 | 0.61 | 12776026 | 12693912 | tier2 | CDS-5UTR | 2815 | NA | 0 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | RALGPS1|TYRP1 | RALGPS1 | TYRP1 | 9 | 9 | 1 | 1 | 6 | 9 | 7 | 0.64 | 129728230 | 12693912 | tier1 | CDS-5UTR | 14236 | non-validated | 0 |
| LGG | TCGA-VM-A8C8-01A | TCGA-VM-A8C8 | MLLT3|TYRP1 | MLLT3 | TYRP1 | 9 | 9 | -1 | 1 | 10 | 12 | 12 | 0.016 | 20456702 | 12693912 | tier1 | CDS-5UTR | 10520 | NA | 0.36401 |
| BRCA | TCGA-E2-A1LA-01A | TCGA-E2-A1LA | ECD|CXCL12 | ECD | CXCL12 | 10 | 10 | -1 | -1 | 10 | 3 | 3 | 0.11 | 74923491 | 44793345 | tier1 | Out-of-frame | 5256 | NA | 0.37083 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | IPMK|CXCL12 | IPMK | CXCL12 | 10 | 10 | -1 | -1 | 11 | 4 | 3 | 0.77 | 59986804 | 44793345 | tier1 | Out-of-frame | 8293 | NA | 0.36258 |
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