Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-A4QR-01A | TCGA-85-A4QR | KRT15|PTN | KRT15 | PTN | 17 | 7 | -1 | -1 | 2 | 94 | 85 | 1 | 39669998 | 136938384 | tier3 | 3UTR-CDS | 9135 | NA | 0.36896 |
| KIRP | TCGA-GL-7773-01A | TCGA-GL-7773 | C8orf34|MET | C8orf34 | MET | 8 | 7 | 1 | 1 | 66 | 59 | 51 | 0.86 | 69351881 | 116414935 | tier1 | In-frame | 2802 | NA | 0 |
| LGG | TCGA-HT-A5R7-01A | TCGA-HT-A5R7 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 4 | 2 | 2 | 0.69 | 116660683 | 116339125 | tier1 | 5UTR-5UTR | 16966 | validated | 0 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | OXR1|MET | OXR1 | MET | 8 | 7 | 1 | 1 | 8 | 9 | 8 | 1.1 | 107726213 | 116411552 | tier1 | In-frame | 12125 | NA | 0.37821 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 10 | 5 | 4 | 0.69 | 116830990 | 116371722 | tier1 | In-frame | 16965 | NA | 0 |
| LUAD | TCGA-93-A4JN-01A | TCGA-93-A4JN | KIF5B|MET | KIF5B | MET | 10 | 7 | -1 | 1 | 31 | 10 | 8 | 0.033 | 32306071 | 116411903 | tier4 | In-frame | 9012 | NA | 0.38068 |
| LUAD | TCGA-38-4628-01A | TCGA-38-4628 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 6 | 5 | 5 | 0.69 | 116593745 | 116339125 | tier1 | CDS-5UTR | 16964 | non-validated | 0 |
| TGCT | TCGA-2G-AAH8-01A | TCGA-2G-AAH8 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 0.69 | 116593745 | 116339125 | tier4 | CDS-5UTR | 16963 | NA | 0 |
| THCA | TCGA-FK-A3S3-01A | TCGA-FK-A3S3 | TFG|MET | TFG | MET | 3 | 7 | 1 | 1 | 14 | 10 | 8 | 1.6 | 100451516 | 116414935 | tier1 | In-frame | 17722 | validated | 0 |
| KIRC | TCGA-A3-3363-01A | TCGA-A3-3363 | WDR60|VIPR2 | WDR60 | VIPR2 | 7 | 7 | 1 | -1 | 14 | 29 | 24 | 0.043 | 158684024 | 158851269 | tier1 | In-frame | 19795 | non-validated | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | ATF7IP|VIPR2 | ATF7IP | VIPR2 | 12 | 7 | 1 | -1 | 13 | 98 | 88 | 0.016 | 14634119 | 158824560 | tier1 | Out-of-frame | 1613 | NA | 0.36866 |
| LGG | TCGA-DU-6401-01A | TCGA-DU-6401 | GDI2|CPVL | GDI2 | CPVL | 10 | 7 | -1 | -1 | 29 | 26 | 22 | 100 | 5842561 | 29160687 | tier4 | CDS-5UTR | 7024 | validated | 0.36715 |
| LIHC | TCGA-G3-A7M5-01A | TCGA-G3-A7M5 | CDKAL1|CRHR2 | CDKAL1 | CRHR2 | 6 | 7 | 1 | -1 | 6 | 1 | 1 | 1 | 21108694 | 30695628 | tier3 | In-frame | 3448 | NA | 0.35348 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | FAM200A|CYP3A5 | FAM200A | CYP3A5 | 7 | 7 | -1 | -1 | 2 | 11 | 11 | 3.6 | 99149477 | 99264688 | tier3 | 5UTR-CDS | 6158 | NA | 0.34046 |
| PRAD | TCGA-KK-A8IA-01A | TCGA-KK-A8IA | MYH3|CYP3A5 | MYH3 | CYP3A5 | 17 | 7 | -1 | -1 | 2 | 3 | 3 | 0.058 | 10532914 | 99264688 | tier2 | In-frame | 10893 | NA | 0.34999 |
| PRAD | TCGA-2A-A8W1-01A | TCGA-2A-A8W1 | ST7|PTPRZ1 | ST7 | PTPRZ1 | 7 | 7 | 1 | 1 | 23 | 13 | 13 | 2.9 | 116593745 | 121568210 | tier1 | In-frame | 16967 | NA | 0 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | ZFAND2A|PHF14 | ZFAND2A | PHF14 | 7 | 7 | -1 | 1 | 18 | 34 | 27 | 0.042 | 1199600 | 11209043 | tier1 | 5UTR-CDS | 20238 | NA | 0 |
| LUAD | TCGA-44-2659-01A | TCGA-44-2659 | GALNT11|EZH2 | GALNT11 | EZH2 | 7 | 7 | 1 | -1 | 31 | 15 | 15 | 0.9 | 151722969 | 148529842 | tier1 | 5UTR-CDS | 6916 | non-validated | 0.37323 |
| PCPG | TCGA-WB-A820-01A | TCGA-WB-A820 | NF1|EZH2 | NF1 | EZH2 | 17 | 7 | 1 | -1 | 5 | 8 | 8 | 1.2 | 29592357 | 148544397 | tier1 | CDS-5UTR | 11405 | NA | 0.38243 |
| ACC | TCGA-OR-A5KZ-01A | TCGA-OR-A5KZ | VPS41|TSGA14 | VPS41 | TSGA14 | 7 | 7 | -1 | -1 | 13 | 6 | 6 | 0.23 | 38794302 | 130067859 | tier1 | In-frame | 19653 | NA | 0 |
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