Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-VS-A952-01A | TCGA-VS-A952 | NFIX|MAST1 | NFIX | MAST1 | 19 | 19 | 1 | 1 | 21 | 10 | 10 | 0.29 | 13136366 | 12975623 | tier1 | In-frame | 11501 | NA | 0.37986 |
| OV | TCGA-09-1668-01B | TCGA-09-1668 | HOOK2|MAST1 | HOOK2 | MAST1 | 19 | 19 | -1 | 1 | 7 | 1 | 1 | 0.46 | 12881746 | 12958662 | tier2 | Out-of-frame | 7920 | NA | 0.37519 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | NFIX|MAST1 | NFIX | MAST1 | 19 | 19 | 1 | 1 | 4 | 2 | 2 | 0.29 | 13136366 | 12962748 | tier1 | Out-of-frame | 11500 | NA | 0.37986 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | C19orf22|JAK3 | C19orf22 | JAK3 | 19 | 19 | -1 | -1 | 7 | 15 | 13 | 1.2 | 913087 | 17953981 | tier1 | Out-of-frame | 2566 | non-validated | 0 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | FAM53B|KCNN1 | FAM53B | KCNN1 | 10 | 19 | -1 | 1 | 23 | 8 | 5 | 0.15 | 126370176 | 18099224 | tier1 | In-frame | 6187 | NA | 0.33752 |
| OV | TCGA-25-1329-01A | TCGA-25-1329 | ARRDC2|KCNN1 | ARRDC2 | KCNN1 | 19 | 19 | 1 | 1 | 3 | 4 | 4 | 0.019 | 18112382 | 18084617 | tier1 | CDS-5UTR | 1462 | NA | 0.348 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | CRTC1|KCNN1 | CRTC1 | KCNN1 | 19 | 19 | 1 | 1 | 10 | 1 | 1 | 0.054 | 18794638 | 18084617 | tier2 | CDS-5UTR | 4242 | NA | 0.35236 |
| ACC | TCGA-OR-A5KY-01A | TCGA-OR-A5KY | TSPAN18|PIK3R2 | TSPAN18 | PIK3R2 | 11 | 19 | 1 | 1 | 23 | 20 | 20 | 0.05 | 44748837 | 18276970 | tier1 | 5UTR-CDS | 18794 | NA | 0 |
| UCEC | TCGA-A5-A1OH-01A | TCGA-A5-A1OH | ZNF790|ATP4A | ZNF790 | ATP4A | 19 | 19 | -1 | -1 | 77 | 62 | 56 | 3.3 | 37340904 | 36044084 | tier1 | NA | 20664 | NA | 0 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | ELL|FKBP8 | ELL | FKBP8 | 19 | 19 | -1 | -1 | 350 | 197 | 179 | 0.25 | 18632731 | 18652805 | tier1 | CDS-5UTR | 5515 | NA | 0.37987 |
| THYM | TCGA-ZB-A96I-01A | TCGA-ZB-A96I | ELL|FKBP8 | ELL | FKBP8 | 19 | 19 | -1 | -1 | 2 | 9 | 8 | 0.25 | 18583645 | 18644157 | tier3 | In-frame | 5516 | NA | 0.37987 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | PPP2R5C|SCN1B | PPP2R5C | SCN1B | 14 | 19 | 1 | 1 | 17 | 6 | 6 | 0.8 | 102276373 | 35523432 | tier1 | In-frame | 13413 | non-validated | 0.37013 |
| LUSC | TCGA-43-7657-01A | TCGA-43-7657 | ZNF599|SCN1B | ZNF599 | SCN1B | 19 | 19 | -1 | 1 | 2 | 4 | 3 | 1.9 | 35258221 | 35523432 | tier2 | In-frame | 20582 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | R3HCC1|GRIK5 | R3HCC1 | GRIK5 | 8 | 19 | 1 | -1 | 4 | 7 | 7 | 0.77 | 23147982 | 42526506 | tier1 | In-frame | 14018 | non-validated | 0 |
| LGG | TCGA-CS-4943-01A | TCGA-CS-4943 | ZNF577|GRIK5 | ZNF577 | GRIK5 | 19 | 19 | -1 | -1 | 8 | 6 | 6 | 1.4 | 52380535 | 42526506 | tier1 | Out-of-frame | 20562 | NA | 0 |
| COAD | TCGA-AA-3697-01A | TCGA-AA-3697 | PEX1|CDK6 | PEX1 | CDK6 | 7 | 7 | -1 | -1 | 18 | 4 | 4 | 0.52 | 92157621 | 92355107 | tier2 | In-frame | 12623 | NA | 0.382 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | BICD1|CDK6 | BICD1 | CDK6 | 12 | 7 | 1 | -1 | 3 | 4 | 3 | 0.3 | 32260478 | 92252400 | tier1 | Out-of-frame | 2096 | NA | 0.38113 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | FAM133B|CDK6 | FAM133B | CDK6 | 7 | 7 | -1 | -1 | 2 | 6 | 6 | 1 | 92219582 | 92463004 | tier2 | CDS-5UTR | 6044 | NA | 0.38362 |
| CESC | TCGA-C5-A1MP-01A | TCGA-C5-A1MP | JUP|PTN | JUP | PTN | 17 | 7 | -1 | -1 | 2 | 3 | 2 | 0.7 | 39910856 | 136938384 | tier4 | 3UTR-CDS | 8510 | NA | 0.37253 |
| LUSC | TCGA-77-8009-01A | TCGA-77-8009 | GLT25D1|PTN | GLT25D1 | PTN | 19 | 7 | 1 | -1 | 2 | 14 | 11 | 0.21 | 17693965 | 136938384 | tier4 | 3UTR-CDS | 7125 | NA | 0.36009 |
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