Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A6YR-01A | TCGA-DX-A6YR | PPP6R2|AURKC | PPP6R2 | AURKC | 22 | 19 | 1 | 1 | 2 | 5 | 5 | 2.2 | 50862043 | 57743110 | tier2 | Out-of-frame | 13447 | NA | 0.35184 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | ZNF587|AURKC | ZNF587 | AURKC | 19 | 19 | 1 | 1 | 14 | 15 | 13 | 3.7 | 58361439 | 57743110 | tier1 | Out-of-frame | 20573 | NA | 0 |
| PRAD | TCGA-G9-6378-01A | TCGA-G9-6378 | RNF10|FBL | RNF10 | FBL | 12 | 19 | 1 | -1 | 48 | 23 | 21 | 1.9 | 120972771 | 40325453 | tier1 | Out-of-frame | 14724 | NA | 0 |
| UCEC | TCGA-PG-A915-01A | TCGA-PG-A915 | SYMPK|DYRK1B | SYMPK | DYRK1B | 19 | 19 | -1 | -1 | 39 | 28 | 22 | 0.38 | 46366316 | 40322608 | tier1 | 5UTR-5UTR | 17233 | NA | 0 |
| BLCA | TCGA-GU-A764-01A | TCGA-GU-A764 | SIPA1L3|GPI | SIPA1L3 | GPI | 19 | 19 | 1 | 1 | 32 | 25 | 24 | 0.38 | 38519796 | 34884153 | tier1 | 5UTR-CDS | 15951 | NA | 0 |
| SARC | TCGA-RN-AAAQ-01A | TCGA-RN-AAAQ | EML1|GPI | EML1 | GPI | 14 | 19 | 1 | 1 | 9 | 12 | 10 | 0.061 | 100259880 | 34884153 | tier1 | Out-of-frame | 5552 | NA | 0.3606 |
| STAD | TCGA-RD-A8MW-01A | TCGA-RD-A8MW | NFYA|AKT2 | NFYA | AKT2 | 6 | 19 | 1 | -1 | 3 | 6 | 5 | 2.5 | 41040823 | 40739858 | tier1 | 5UTR-CDS | 11528 | NA | 0.38463 |
| CHOL | TCGA-YR-A95A-01A | TCGA-YR-A95A | ARHGAP35|SLC1A5 | ARHGAP35 | SLC1A5 | 19 | 19 | 1 | -1 | 7 | 5 | 5 | 0.021 | 47492932 | 47282165 | tier1 | Out-of-frame | 1251 | NA | 0.35032 |
| PRAD | TCGA-J4-A67S-01A | TCGA-J4-A67S | CASZ1|PRKD2 | CASZ1 | PRKD2 | 1 | 19 | -1 | -1 | 8 | 5 | 5 | 0.084 | 10710749 | 47185005 | tier4 | In-frame | 3034 | NA | 0.37489 |
| LGG | TCGA-CS-4944-01A | TCGA-CS-4944 | TMEM91|TGFB1 | TMEM91 | TGFB1 | 19 | 19 | 1 | -1 | 4 | 7 | 7 | 1.7 | 41870000 | 41838186 | tier1 | 5UTR-CDS | 18065 | NA | 0 |
| LUSC | TCGA-58-8387-01A | TCGA-58-8387 | RPS19|CEACAM5 | RPS19 | CEACAM5 | 19 | 19 | 1 | 1 | 547 | 580 | 525 | 100 | 42365281 | 42231154 | tier1 | In-frame | 15036 | NA | 0 |
| ACC | TCGA-OR-A5JP-01A | TCGA-OR-A5JP | RAVER1|TYK2 | RAVER1 | TYK2 | 19 | 19 | -1 | -1 | 2 | 2 | 1 | 0.16 | 10426895 | 10491352 | tier3 | 3UTR-5UTR | 14398 | NA | 0 |
| BLCA | TCGA-K4-A5RH-01A | TCGA-K4-A5RH | CCNL2|TYK2 | CCNL2 | TYK2 | 1 | 19 | -1 | -1 | 2 | 3 | 2 | 0.5 | 1322093 | 10491352 | tier3 | 3UTR-5UTR | 3227 | NA | 0.37934 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | PLD3|TYK2 | PLD3 | TYK2 | 19 | 19 | 1 | -1 | 2 | 27 | 19 | 0.34 | 40884390 | 10491352 | tier3 | 3UTR-5UTR | 12983 | NA | 0.37384 |
| BRCA | TCGA-A8-A06Y-01A | TCGA-A8-A06Y | STC2|TYK2 | STC2 | TYK2 | 5 | 19 | -1 | -1 | 2 | 2 | 2 | 0.24 | 172741716 | 10491352 | tier3 | 3UTR-5UTR | 17032 | NA | 0 |
| BRCA | TCGA-BH-A18V-06A | TCGA-BH-A18V | TBC1D9B|TYK2 | TBC1D9B | TYK2 | 5 | 19 | -1 | -1 | 2 | 1 | 1 | 0.005 | 179289743 | 10491352 | tier3 | 3UTR-5UTR | 17512 | NA | 0 |
| HNSC | TCGA-CR-7374-01A | TCGA-CR-7374 | AP2M1|TYK2 | AP2M1 | TYK2 | 3 | 19 | 1 | -1 | 2 | 16 | 15 | 0.008 | 183901878 | 10491352 | tier3 | 3UTR-5UTR | 1085 | NA | 0.37881 |
| HNSC | TCGA-IQ-A61E-01A | TCGA-IQ-A61E | KRT14|TYK2 | KRT14 | TYK2 | 17 | 19 | -1 | -1 | 2 | 22 | 12 | 0.26 | 39738531 | 10491352 | tier3 | 3UTR-5UTR | 9133 | NA | 0.37647 |
| HNSC | TCGA-CV-6933-01A | TCGA-CV-6933 | KRT5|TYK2 | KRT5 | TYK2 | 12 | 19 | -1 | -1 | 2 | 2 | 2 | 0.39 | 52908359 | 10491352 | tier3 | 3UTR-5UTR | 9156 | NA | 0.37509 |
| KIRC | TCGA-A3-3374-01A | TCGA-A3-3374 | TJP1|TYK2 | TJP1 | TYK2 | 15 | 19 | -1 | -1 | 2 | 1 | 1 | 0.35 | 29992356 | 10491352 | tier3 | 3UTR-5UTR | 17840 | NA | 0 |
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