Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | DNM2|RELB | DNM2 | RELB | 19 | 19 | 1 | 1 | 39 | 35 | 34 | 0.13 | 10829079 | 45537502 | tier1 | Out-of-frame | 4983 | NA | 0.3833 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | PRRG2|FCGRT | PRRG2 | FCGRT | 19 | 19 | 1 | 1 | 3 | 20 | 20 | 0.11 | 50087209 | 50027764 | tier1 | In-frame | 13658 | NA | 0.35718 |
| STAD | TCGA-HU-A4HD-01A | TCGA-HU-A4HD | GPATCH1|FCGRT | GPATCH1 | FCGRT | 19 | 19 | 1 | 1 | 4 | 62 | 53 | 2.7 | 33610023 | 50027764 | tier1 | In-frame | 7309 | NA | 0.35528 |
| BLCA | TCGA-GV-A40G-01A | TCGA-GV-A40G | AP3D1|DOT1L | AP3D1 | DOT1L | 19 | 19 | -1 | 1 | 2 | 2 | 2 | 0.009 | 2151238 | 2180712 | tier2 | In-frame | 1092 | NA | 0.35647 |
| COAD | TCGA-AA-3511-01A | TCGA-AA-3511 | BTBD2|DOT1L | BTBD2 | DOT1L | 19 | 19 | -1 | 1 | 2 | 2 | 1 | 0.057 | 2015296 | 2226182 | tier3 | Out-of-frame | 2261 | NA | 0.37315 |
| PAAD | TCGA-3A-A9IH-01A | TCGA-3A-A9IH | AP3D1|DOT1L | AP3D1 | DOT1L | 19 | 19 | -1 | 1 | 4 | 2 | 2 | 0.009 | 2151238 | 2210399 | tier1 | In-frame | 1091 | NA | 0.35647 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | HIVEP3|DOT1L | HIVEP3 | DOT1L | 1 | 19 | -1 | 1 | 13 | 3 | 3 | 0.077 | 42094420 | 2180712 | tier1 | 5UTR-CDS | 7803 | NA | 0.36631 |
| BRCA | TCGA-A1-A0SQ-01A | TCGA-A1-A0SQ | CCDC106|CD37 | CCDC106 | CD37 | 19 | 19 | 1 | 1 | 13 | 5 | 5 | 1.4 | 56160950 | 49838971 | tier2 | Out-of-frame | 3104 | NA | 0.36581 |
| PRAD | TCGA-YL-A8S9-01A | TCGA-YL-A8S9 | UCK2|CD37 | UCK2 | CD37 | 1 | 19 | 1 | 1 | 2 | 1 | 1 | 0.022 | 165797169 | 49838971 | tier3 | In-frame | 19178 | NA | 0 |
| BRCA | TCGA-D8-A1XD-01A | TCGA-D8-A1XD | EEF1A2|DKKL1 | EEF1A2 | DKKL1 | 20 | 19 | -1 | 1 | 296 | 225 | 171 | 0.23 | 62121832 | 49877974 | tier1 | In-frame | 5287 | NA | 0.36108 |
| SKCM | TCGA-D3-A2JE-06A | TCGA-D3-A2JE | ZSCAN5A|DKKL1 | ZSCAN5A | DKKL1 | 19 | 19 | -1 | 1 | 8 | 138 | 125 | 0.24 | 56824652 | 49877974 | tier1 | In-frame | 20713 | NA | 0 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | SBNO2|CLEC4M | SBNO2 | CLEC4M | 19 | 19 | -1 | 1 | 3 | 4 | 4 | 0.097 | 1147308 | 7830524 | tier1 | Out-of-frame | 15350 | non-validated | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | NFIC|IL4I1 | NFIC | IL4I1 | 19 | 19 | 1 | -1 | 15 | 11 | 10 | 0.7 | 3382241 | 50394364 | tier1 | Out-of-frame | 11484 | non-validated | 0.36034 |
| SKCM | TCGA-D3-A2JN-06A | TCGA-D3-A2JN | AP2A1|VRK3 | AP2A1 | VRK3 | 19 | 19 | 1 | -1 | 2 | 1 | 1 | 0.075 | 50295321 | 50482499 | tier3 | Out-of-frame | 1070 | NA | 0.36416 |
| BRCA | TCGA-D8-A1XU-01A | TCGA-D8-A1XU | ZNF121|OLFM2 | ZNF121 | OLFM2 | 19 | 19 | -1 | -1 | 39 | 56 | 48 | 1.4 | 9695137 | 9971470 | tier1 | 5UTR-CDS | 20359 | NA | 0 |
| SARC | TCGA-DX-A8BK-01A | TCGA-DX-A8BK | CTNS|OLFM2 | CTNS | OLFM2 | 17 | 19 | 1 | -1 | 3 | 1 | 1 | 2.3 | 3543561 | 9971470 | tier2 | Out-of-frame | 4386 | NA | 0.35989 |
| SKCM | TCGA-FS-A1ZP-06A | TCGA-FS-A1ZP | ENTPD5|OLFM2 | ENTPD5 | OLFM2 | 14 | 19 | -1 | -1 | 2 | 2 | 2 | 1.3 | 74453517 | 9971470 | tier3 | In-frame | 5602 | non-validated | 0.36016 |
| LUSC | TCGA-46-6026-01A | TCGA-46-6026 | ZSWIM4|SLC1A6 | ZSWIM4 | SLC1A6 | 19 | 19 | 1 | -1 | 5 | 4 | 4 | 0.28 | 13910735 | 15083729 | tier1 | Out-of-frame | 20719 | NA | 0 |
| SKCM | TCGA-BF-A5EQ-01A | TCGA-BF-A5EQ | ZNF253|SLC1A6 | ZNF253 | SLC1A6 | 19 | 19 | 1 | -1 | 5 | 3 | 3 | 0.042 | 19976808 | 15083729 | tier1 | In-frame | 20421 | NA | 0 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | PPP6R1|AURKC | PPP6R1 | AURKC | 19 | 19 | -1 | 1 | 6 | 20 | 14 | 0.56 | 55769803 | 57743401 | tier1 | 5UTR-CDS | 13446 | NA | 0.35184 |
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