Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THYM | TCGA-ZB-A965-01A | TCGA-ZB-A965 | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 20 | 9 | 8 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8028 | NA | 0.3803 |
| HNSC | TCGA-CR-7367-01A | TCGA-CR-7367 | CHM|KLHL4 | CHM | KLHL4 | X | X | -1 | 1 | 7 | 4 | 4 | 0.32 | 85282495 | 86868880 | tier1 | In-frame | 3692 | NA | 0.36069 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | FARP1|NALCN | FARP1 | NALCN | 13 | 13 | 1 | -1 | 4 | 6 | 5 | 4.3 | 98865667 | 101944717 | tier1 | Out-of-frame | 6242 | NA | 0.34873 |
| GBM | TCGA-12-0619-01A | TCGA-12-0619 | MED4|HTR2A | MED4 | HTR2A | 13 | 13 | -1 | -1 | 3 | 3 | 2 | 3.1 | 48653980 | 47409774 | tier1 | In-frame | 10229 | NA | 0.37716 |
| BLCA | TCGA-UY-A8OB-01A | TCGA-UY-A8OB | KPNA3|MLNR | KPNA3 | MLNR | 13 | 13 | -1 | 1 | 10 | 2 | 1 | 0.77 | 50366574 | 49796176 | tier2 | Out-of-frame | 9099 | NA | 0.37068 |
| SARC | TCGA-WK-A8XS-01A | TCGA-WK-A8XS | CRYL1|MLNR | CRYL1 | MLNR | 13 | 13 | -1 | 1 | 10 | 3 | 3 | 0.077 | 21099893 | 49796176 | tier1 | Out-of-frame | 4251 | NA | 0.35521 |
| BRCA | TCGA-E2-A2P6-01A | TCGA-E2-A2P6 | FBXL3|KLF5 | FBXL3 | KLF5 | 13 | 13 | -1 | 1 | 4 | 3 | 3 | 0.13 | 77600962 | 73635999 | tier1 | 5UTR-CDS | 6325 | NA | 0.37759 |
| PRAD | TCGA-HC-7233-01A | TCGA-HC-7233 | STARD13|KLF5 | STARD13 | KLF5 | 13 | 13 | -1 | 1 | 3 | 3 | 3 | 2.6 | 33859607 | 73635999 | tier1 | Out-of-frame | 17000 | non-validated | 0 |
| BLCA | TCGA-DK-A2I4-01A | TCGA-DK-A2I4 | MCF2L|STK24 | MCF2L | STK24 | 13 | 13 | 1 | -1 | 2 | 2 | 1 | 0.29 | 113623028 | 99171727 | tier4 | Out-of-frame | 10089 | NA | 0.38165 |
| LUSC | TCGA-63-A5MW-01A | TCGA-63-A5MW | NIPBL|STK24 | NIPBL | STK24 | 5 | 13 | 1 | -1 | 22 | 27 | 24 | 1.6 | 36877280 | 99171727 | tier2 | 5UTR-CDS | 11573 | NA | 0.37433 |
| SKCM | TCGA-EB-A550-01A | TCGA-EB-A550 | GTF2F1|ACP5 | GTF2F1 | ACP5 | 19 | 19 | -1 | -1 | 64 | 49 | 47 | 0.55 | 6383322 | 11686067 | tier1 | Out-of-frame | 7524 | NA | 0.3706 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | ZNF618|PARP4 | ZNF618 | PARP4 | 9 | 13 | 1 | -1 | 10 | 12 | 12 | 0.15 | 116638693 | 25027792 | tier1 | Out-of-frame | 20594 | validated | 0 |
| BLCA | TCGA-GC-A3RC-01A | TCGA-GC-A3RC | RASL11A|DHRS12 | RASL11A | DHRS12 | 13 | 13 | 1 | -1 | 4 | 2 | 2 | 0.37 | 27845205 | 52365393 | tier1 | Out-of-frame | 14378 | NA | 0 |
| SARC | TCGA-X6-A8C5-01A | TCGA-X6-A8C5 | MYH10|OLFM4 | MYH10 | OLFM4 | 17 | 13 | -1 | 1 | 8 | 6 | 6 | 0.23 | 8533972 | 53608483 | tier1 | 5UTR-CDS | 10886 | NA | 0.37584 |
| UCEC | TCGA-A5-A2K4-01A | TCGA-A5-A2K4 | COQ9|CCL17 | COQ9 | CCL17 | 16 | 16 | 1 | 1 | 16 | 13 | 9 | 0.42 | 57486848 | 57448993 | tier1 | Out-of-frame | 4073 | NA | 0.35869 |
| PRAD | TCGA-KK-A8IJ-01A | TCGA-KK-A8IJ | ZNF292|PRSS54 | ZNF292 | PRSS54 | 6 | 16 | 1 | -1 | 5 | 2 | 1 | 2.4 | 87865477 | 58328116 | tier2 | CDS-5UTR | 20446 | NA | 0 |
| KIRP | TCGA-5P-A9JU-01A | TCGA-5P-A9JU | CNOT1|SLC38A7 | CNOT1 | SLC38A7 | 16 | 16 | -1 | -1 | 2 | 1 | 1 | 0.029 | 58663632 | 58706147 | tier4 | 5UTR-CDS | 3926 | NA | 0.35769 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | ESRP2|SLC7A6 | ESRP2 | SLC7A6 | 16 | 16 | -1 | 1 | 25 | 20 | 17 | 0.13 | 68265081 | 68321649 | tier1 | In-frame | 5834 | non-validated | 0.33265 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | NFAT5|SLC7A6 | NFAT5 | SLC7A6 | 16 | 16 | 1 | 1 | 2 | 1 | 1 | 0.075 | 69602451 | 68321649 | tier2 | 5UTR-CDS | 11444 | validated | 0.36195 |
| LUAD | TCGA-MP-A4TF-01A | TCGA-MP-A4TF | RANBP10|SLC7A6 | RANBP10 | SLC7A6 | 16 | 16 | -1 | 1 | 2 | 1 | 1 | 0.34 | 67839331 | 68328608 | tier2 | In-frame | 14252 | NA | 0 |
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