Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-BT-A20V-01A | TCGA-BT-A20V | ITCH|AHCY | ITCH | AHCY | 20 | 20 | 1 | -1 | 26 | 22 | 17 | 1.9 | 32981687 | 32883391 | tier1 | In-frame | 8353 | non-validated | 0.37285 |
| BRCA | TCGA-BH-A0HB-01A | TCGA-BH-A0HB | EPB41L3|LAMA1 | EPB41L3 | LAMA1 | 18 | 18 | -1 | -1 | 6 | 6 | 6 | 0.13 | 5395066 | 7037750 | tier1 | In-frame | 5652 | NA | 0.37643 |
| CESC | TCGA-VS-A9UB-01A | TCGA-VS-A9UB | C18orf8|RIOK3 | C18orf8 | RIOK3 | 18 | 18 | 1 | 1 | 2 | 3 | 3 | 0.31 | 21089243 | 21061136 | tier3 | In-frame | 2549 | NA | 0 |
| HNSC | TCGA-CQ-5332-01A | TCGA-CQ-5332 | OSBPL1A|RIOK3 | OSBPL1A | RIOK3 | 18 | 18 | -1 | 1 | 11 | 7 | 6 | 0.014 | 21805006 | 21053393 | tier1 | In-frame | 12070 | NA | 0.36044 |
| BLCA | TCGA-CU-A3KJ-01A | TCGA-CU-A3KJ | TBL1X|GPR143 | TBL1X | GPR143 | X | X | 1 | -1 | 4 | 5 | 5 | 4.5 | 9665469 | 9693880 | tier1 | In-frame | 17540 | NA | 0 |
| HNSC | TCGA-HL-7533-01A | TCGA-HL-7533 | TBL1X|GPR143 | TBL1X | GPR143 | X | X | 1 | -1 | 55 | 44 | 36 | 4.5 | 9469889 | 9711713 | tier1 | 5UTR-CDS | 17541 | NA | 0 |
| PRAD | TCGA-KK-A8IC-01A | TCGA-KK-A8IC | OGT|POLA1 | OGT | POLA1 | X | X | 1 | 1 | 3 | 4 | 2 | 3.7 | 70757922 | 24828015 | tier1 | In-frame | 12015 | NA | 0.37711 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | REPS2|GLRA2 | REPS2 | GLRA2 | X | X | 1 | 1 | 6 | 10 | 10 | 0.26 | 17121902 | 14708832 | tier1 | In-frame | 14545 | NA | 0 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | STAG2|XIAP | STAG2 | XIAP | X | X | 1 | 1 | 2 | 2 | 2 | 0.15 | 123094716 | 123034343 | tier4 | 5UTR-CDS | 16992 | non-validated | 0 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | PRICKLE3|CACNA1F | PRICKLE3 | CACNA1F | X | X | -1 | -1 | 17 | 9 | 6 | 0.17 | 49040187 | 49065853 | tier1 | In-frame | 13519 | NA | 0.35226 |
| BLCA | TCGA-FD-A62P-01A | TCGA-FD-A62P | ATP6AP1|OPN1LW | ATP6AP1 | OPN1LW | X | X | 1 | 1 | 10 | 6 | 4 | 0.33 | 153657520 | 153421769 | tier1 | In-frame | 1743 | NA | 0.36829 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | NUF2|PHEX | NUF2 | PHEX | 1 | X | 1 | 1 | 62 | 27 | 27 | 0.43 | 163310216 | 22151640 | tier4 | In-frame | 11872 | NA | 0.35829 |
| UCEC | TCGA-FI-A3PV-01A | TCGA-FI-A3PV | BCOR|PHEX | BCOR | PHEX | X | X | -1 | 1 | 12 | 6 | 3 | 1.4 | 40036260 | 22231021 | tier1 | 5UTR-CDS | 2052 | NA | 0.37037 |
| BRCA | TCGA-A2-A04W-01A | TCGA-A2-A04W | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 3 | 2 | 2 | 0.3 | 135586622 | 135572292 | tier4 | Out-of-frame | 8021 | NA | 0.3803 |
| BRCA | TCGA-A8-A06X-01A | TCGA-A8-A06X | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 23 | 12 | 11 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8022 | NA | 0.3803 |
| COAD | TCGA-CK-5915-01A | TCGA-CK-5915 | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 31 | 23 | 22 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8023 | NA | 0.3803 |
| LUAD | TCGA-L9-A443-01A | TCGA-L9-A443 | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 18 | 4 | 3 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8025 | NA | 0.3803 |
| PCPG | TCGA-QR-A6GZ-01A | TCGA-QR-A6GZ | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 21 | 5 | 3 | 0.3 | 135586622 | 135572292 | tier4 | Out-of-frame | 8026 | NA | 0.3803 |
| TGCT | TCGA-2G-AAGX-01A | TCGA-2G-AAGX | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 11 | 8 | 8 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8020 | NA | 0.3803 |
| THCA | TCGA-EM-A3O6-01A | TCGA-EM-A3O6 | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 62 | 19 | 17 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8024 | NA | 0.3803 |
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