Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-GC-A3I6-01A | TCGA-GC-A3I6 | TPX2|HM13 | TPX2 | HM13 | 20 | 20 | 1 | 1 | 468 | 648 | 549 | 0.81 | 30327424 | 30115287 | tier1 | 5UTR-CDS | 18526 | NA | 0 |
| GBM | TCGA-06-0238-01A | TCGA-06-0238 | TM9SF4|HM13 | TM9SF4 | HM13 | 20 | 20 | 1 | 1 | 2 | 11 | 11 | 0.074 | 30697558 | 30136832 | tier2 | Out-of-frame | 17878 | NA | 0 |
| HNSC | TCGA-CN-6024-01A | TCGA-CN-6024 | CBFA2T2|HM13 | CBFA2T2 | HM13 | 20 | 20 | 1 | 1 | 10 | 18 | 18 | 0.14 | 32078107 | 30132750 | tier1 | 5UTR-CDS | 3050 | NA | 0.36133 |
| LUSC | TCGA-66-2789-01A | TCGA-66-2789 | TM9SF4|HM13 | TM9SF4 | HM13 | 20 | 20 | 1 | 1 | 84 | 55 | 49 | 0.074 | 30747914 | 30154013 | tier1 | In-frame | 17879 | non-validated | 0 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | SPECC1|HM13 | SPECC1 | HM13 | 17 | 20 | 1 | 1 | 4 | 8 | 8 | 0.53 | 20135718 | 30115287 | tier2 | Out-of-frame | 16688 | NA | 0 |
| UCEC | TCGA-B5-A3FH-01A | TCGA-B5-A3FH | TPX2|HM13 | TPX2 | HM13 | 20 | 20 | 1 | 1 | 90 | 31 | 25 | 0.81 | 30330450 | 30154013 | tier1 | 5UTR-CDS | 18525 | NA | 0 |
| UCS | TCGA-ND-A4WF-01A | TCGA-ND-A4WF | EYA2|MYLK2 | EYA2 | MYLK2 | 20 | 20 | 1 | 1 | 29 | 29 | 22 | 0.007 | 45725807 | 30418622 | tier1 | In-frame | 5943 | NA | 0.36907 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | TNRC6C|PLCB4 | TNRC6C | PLCB4 | 17 | 20 | 1 | 1 | 33 | 26 | 24 | 0.58 | 76079247 | 9433994 | tier1 | In-frame | 18403 | NA | 0 |
| LIHC | TCGA-G3-A25X-01A | TCGA-G3-A25X | POFUT1|HCK | POFUT1 | HCK | 20 | 20 | 1 | 1 | 70 | 38 | 37 | 0.41 | 30818864 | 30689120 | tier1 | Out-of-frame | 13131 | NA | 0.38197 |
| STAD | TCGA-CG-4304-01A | TCGA-CG-4304 | IFT52|HCK | IFT52 | HCK | 20 | 20 | 1 | 1 | 4 | 1 | 1 | 0.14 | 42249565 | 30671697 | tier2 | Out-of-frame | 8072 | NA | 0.38155 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | SAMHD1|HCK | SAMHD1 | HCK | 20 | 20 | -1 | 1 | 3 | 4 | 4 | 1.3 | 35563432 | 30659465 | tier1 | CDS-5UTR | 15301 | non-validated | 0 |
| COAD | TCGA-DM-A1HA-01A | TCGA-DM-A1HA | PANK2|PAK7 | PANK2 | PAK7 | 20 | 20 | 1 | -1 | 14 | 9 | 8 | 0.82 | 3870375 | 9624987 | tier1 | CDS-5UTR | 12241 | NA | 0.37727 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | RALY|PAK7 | RALY | PAK7 | 20 | 20 | 1 | -1 | 34 | 24 | 22 | 0.088 | 32619410 | 9538381 | tier1 | 5UTR-CDS | 14242 | NA | 0 |
| BRCA | TCGA-AR-A254-01A | TCGA-AR-A254 | GTF2B|BPI | GTF2B | BPI | 1 | 20 | -1 | 1 | 59 | 5 | 3 | 0.48 | 89357166 | 36959450 | tier1 | In-frame | 7513 | NA | 0.36725 |
| LUAD | TCGA-44-A47B-01A | TCGA-44-A47B | DLGAP4|BPI | DLGAP4 | BPI | 20 | 20 | 1 | 1 | 12 | 6 | 6 | 0.15 | 35129014 | 36917429 | tier1 | Out-of-frame | 4895 | NA | 0.36441 |
| READ | TCGA-DC-6157-01A | TCGA-DC-6157 | NAPB|CST9L | NAPB | CST9L | 20 | 20 | -1 | -1 | 5 | 8 | 8 | 0.037 | 23375559 | 23546724 | tier1 | In-frame | 11088 | NA | 0.33555 |
| ACC | TCGA-OR-A5KY-01A | TCGA-OR-A5KY | B4GALT5|ASIP | B4GALT5 | ASIP | 20 | 20 | -1 | 1 | 26 | 38 | 36 | 100 | 48330113 | 32848171 | tier1 | CDS-5UTR | 1877 | NA | 0.34576 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | MADD|ASIP | MADD | ASIP | 11 | 20 | 1 | 1 | 9 | 3 | 2 | 0.43 | 47346128 | 32848171 | tier1 | CDS-5UTR | 9751 | NA | 0.35108 |
| UCEC | TCGA-EY-A2ON-01A | TCGA-EY-A2ON | STX5|ASIP | STX5 | ASIP | 11 | 20 | -1 | 1 | 7 | 8 | 7 | 0.037 | 62591638 | 32848171 | tier1 | CDS-5UTR | 17131 | NA | 0 |
| ACC | TCGA-OR-A5LO-01A | TCGA-OR-A5LO | WRAP53|AHCY | WRAP53 | AHCY | 17 | 20 | 1 | -1 | 10 | 10 | 9 | 0.028 | 7593019 | 32868971 | tier1 | In-frame | 19904 | NA | 0 |
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