Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-CC-A9FU-01A | TCGA-CC-A9FU | ZC3H7B|L3MBTL2 | ZC3H7B | L3MBTL2 | 22 | 22 | 1 | 1 | 35 | 31 | 29 | 0.2 | 41697776 | 41615423 | tier1 | 5UTR-CDS | 20153 | NA | 0 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | PACSIN2|CERK | PACSIN2 | CERK | 22 | 22 | -1 | -1 | 19 | 11 | 10 | 0.15 | 43342903 | 47083103 | tier1 | 5UTR-CDS | 12172 | NA | 0.35922 |
| LAML | TCGA-AB-2897-03A | TCGA-AB-2897 | C22orf34|BRD1 | C22orf34 | BRD1 | 22 | 22 | -1 | -1 | 2 | 1 | 1 | 0.008 | 50051053 | 50217979 | tier4 | CDS-5UTR | 2670 | NA | 0 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | GRAP2|BRD1 | GRAP2 | BRD1 | 22 | 22 | 1 | -1 | 49 | 30 | 28 | 2.2 | 40365537 | 50192767 | tier1 | In-frame | 7401 | non-validated | 0.38204 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | C22orf34|HDAC10 | C22orf34 | HDAC10 | 22 | 22 | -1 | -1 | 9 | 8 | 7 | 0.72 | 50020491 | 50689334 | tier1 | Out-of-frame | 2671 | NA | 0 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | GALNT11|FKBP3 | GALNT11 | FKBP3 | 7 | 14 | 1 | -1 | 7 | 4 | 4 | 0.16 | 151724803 | 45600003 | tier1 | 5UTR-CDS | 6917 | NA | 0.36879 |
| HNSC | TCGA-C9-A480-01A | TCGA-C9-A480 | STRN3|COCH | STRN3 | COCH | 14 | 14 | -1 | 1 | 2 | 1 | 1 | 1.3 | 31495110 | 31346778 | tier2 | Out-of-frame | 17114 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | NEMF|METTL21D | NEMF | METTL21D | 14 | 14 | -1 | -1 | 17 | 13 | 12 | 0.09 | 50255864 | 50576431 | tier1 | In-frame | 11374 | NA | 0 |
| BRCA | TCGA-E9-A1N9-01A | TCGA-E9-A1N9 | NEMF|CDKL1 | NEMF | CDKL1 | 14 | 14 | -1 | -1 | 13 | 26 | 24 | 0.4 | 50295009 | 50808940 | tier1 | In-frame | 11373 | NA | 0.36133 |
| COAD | TCGA-A6-5667-01A | TCGA-A6-5667 | FOXN3|CDKL1 | FOXN3 | CDKL1 | 14 | 14 | -1 | -1 | 34 | 22 | 22 | 0.62 | 89878278 | 50796899 | tier1 | In-frame | 6672 | NA | 0.36591 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | ECI1|CDKN3 | ECI1 | CDKN3 | 16 | 14 | -1 | 1 | 2 | 5 | 5 | 100 | 2301317 | 54868242 | tier3 | Out-of-frame | 5263 | NA | 0.35989 |
| LUSC | TCGA-56-8629-01A | TCGA-56-8629 | PARVB|ATP6V1D | PARVB | ATP6V1D | 22 | 14 | 1 | -1 | 5 | 4 | 2 | 0.11 | 44420331 | 67819757 | tier1 | Out-of-frame | 12312 | NA | 0.37232 |
| OV | TCGA-61-1738-01A | TCGA-61-1738 | NCOA6|SLC10A1 | NCOA6 | SLC10A1 | 20 | 14 | -1 | -1 | 2 | 13 | 13 | 0.19 | 33413275 | 70253024 | tier2 | 5UTR-CDS | 11225 | NA | 0.36876 |
| PRAD | TCGA-HC-7232-01A | TCGA-HC-7232 | GPHN|SLC8A3 | GPHN | SLC8A3 | 14 | 14 | 1 | -1 | 13 | 13 | 11 | 0.066 | 67589094 | 70527656 | tier1 | In-frame | 7340 | NA | 0.36202 |
| LUSC | TCGA-34-5236-01A | TCGA-34-5236 | ZFHX4|VRK1 | ZFHX4 | VRK1 | 8 | 14 | 1 | 1 | 6 | 12 | 12 | 0.87 | 77620283 | 97397668 | tier1 | NA | 20264 | NA | 0 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | MTHFD1|PAPLN | MTHFD1 | PAPLN | 14 | 14 | 1 | 1 | 28 | 9 | 7 | 0.73 | 64855186 | 73711352 | tier1 | Out-of-frame | 10793 | NA | 0.36028 |
| BLCA | TCGA-DK-A1AC-01A | TCGA-DK-A1AC | TTC7B|RPS6KA5 | TTC7B | RPS6KA5 | 14 | 14 | -1 | -1 | 6 | 6 | 6 | 0.52 | 91282519 | 91341704 | tier1 | 5UTR-CDS | 18890 | NA | 0 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | TTC7B|RPS6KA5 | TTC7B | RPS6KA5 | 14 | 14 | -1 | -1 | 6 | 4 | 2 | 0.52 | 91161844 | 91372643 | tier1 | Out-of-frame | 18891 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | HNRNPC|CHD8 | HNRNPC | CHD8 | 14 | 14 | -1 | -1 | 3 | 68 | 59 | 4.6 | 21698478 | 21854335 | tier2 | Out-of-frame | 7888 | NA | 0.38116 |
| BRCA | TCGA-A8-A09A-01A | TCGA-A8-A09A | VMP1|PSMA6 | VMP1 | PSMA6 | 17 | 14 | 1 | 1 | 12 | 17 | 16 | 100 | 57851246 | 35786455 | tier1 | Out-of-frame | 19593 | NA | 0 |
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