TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
HNSC	TCGA-CN-A49A-01A	TCGA-CN-A49A	MYH9\|TXN2	MYH9	TXN2	22	22	-1	-1	9	6	6	0.003	36783852	36863964	tier1	5UTR-CDS	10919	NA	0.37799
LIHC	TCGA-BC-A10R-01A	TCGA-BC-A10R	MYH9\|TXN2	MYH9	TXN2	22	22	-1	-1	61	72	67	0.003	36783852	36863964	tier1	5UTR-CDS	10918	NA	0.37799
LUAD	TCGA-55-8299-01A	TCGA-55-8299	MYH9\|TXN2	MYH9	TXN2	22	22	-1	-1	7	9	9	0.003	36718474	36876884	tier1	In-frame	10916	non-validated	0.37799
OV	TCGA-23-1107-01A	TCGA-23-1107	MYH9\|TXN2	MYH9	TXN2	22	22	-1	-1	2	66	57	0.003	36783852	36876884	tier2	5UTR-CDS	10915	NA	0.37799
UCEC	TCGA-EY-A2ON-01A	TCGA-EY-A2ON	MYH9\|TXN2	MYH9	TXN2	22	22	-1	-1	2	5	4	0.003	36705327	36863964	tier4	Out-of-frame	10920	NA	0.37799
ACC	TCGA-OR-A5J7-01A	TCGA-OR-A5J7	MKL1\|SLC25A17	MKL1	SLC25A17	22	22	-1	-1	6	5	5	1.3	40859225	41175129	tier1	In-frame	10408	NA	0.36109
CESC	TCGA-UC-A7PF-01A	TCGA-UC-A7PF	MKL1\|SLC25A17	MKL1	SLC25A17	22	22	-1	-1	16	6	5	1.3	41032482	41175129	tier1	5UTR-CDS	10409	NA	0.36109
LUSC	TCGA-60-2706-01A	TCGA-60-2706	MKL1\|SLC25A17	MKL1	SLC25A17	22	22	-1	-1	36	21	21	1.3	40990678	41195087	tier1	5UTR-CDS	10406	NA	0.36109
SKCM	TCGA-XV-AAZY-01A	TCGA-XV-AAZY	FCHO2\|SLC25A17	FCHO2	SLC25A17	5	22	1	-1	11	16	16	0.01	72251956	41175129	tier1	Out-of-frame	6383	NA	0.3508
STAD	TCGA-B7-A5TN-01A	TCGA-B7-A5TN	MKL1\|SLC25A17	MKL1	SLC25A17	22	22	-1	-1	4	13	13	1.3	40948110	41175129	tier1	5UTR-CDS	10407	NA	0.36109
UCS	TCGA-N8-A4PQ-01A	TCGA-N8-A4PQ	DGKD\|SLC25A17	DGKD	SLC25A17	2	22	1	-1	21	13	13	1.9	234299129	41175129	tier1	Out-of-frame	4754	NA	0.36883
ESCA	TCGA-L5-A4OQ-01A	TCGA-L5-A4OQ	FAM118A\|UPK3A	FAM118A	UPK3A	22	22	1	1	10	139	122	0.13	45706064	45689062	tier1	5UTR-CDS	6019	NA	0.33499
OV	TCGA-13-1405-01A	TCGA-13-1405	ETHE1\|UPK3A	ETHE1	UPK3A	19	22	-1	1	18	23	21	100	44030667	45691441	tier2	Out-of-frame	5849	NA	0.35321
BRCA	TCGA-C8-A132-01A	TCGA-C8-A132	WIPF2\|IL2RB	WIPF2	IL2RB	17	22	1	-1	457	408	365	0.09	38375744	37540245	tier1	5UTR-5UTR	19865	NA	0
BRCA	TCGA-BH-A0AU-01A	TCGA-BH-A0AU	ARHGEF17\|EP300	ARHGEF17	EP300	11	22	1	1	22	4	4	0.22	73022875	41545042	tier1	In-frame	1303	NA	0.38597
KIRC	TCGA-B0-5692-01A	TCGA-B0-5692	TNRC6B\|EP300	TNRC6B	EP300	22	22	1	1	10	9	9	0.003	40552186	41572251	tier1	Out-of-frame	18391	NA	0
LUSC	TCGA-34-5929-01A	TCGA-34-5929	TTC28\|EP300	TTC28	EP300	22	22	-1	1	2	2	2	0.33	29025540	41531817	tier3	Out-of-frame	18841	NA	0
BRCA	TCGA-EW-A6SB-01A	TCGA-EW-A6SB	ZC3H7B\|L3MBTL2	ZC3H7B	L3MBTL2	22	22	1	1	12	7	7	0.2	41723368	41605700	tier1	In-frame	20154	NA	0
LGG	TCGA-DU-6404-01A	TCGA-DU-6404	BCOR\|L3MBTL2	BCOR	L3MBTL2	X	22	-1	1	99	43	42	0.22	39931602	41605700	tier1	In-frame	2050	non-validated	0.36852
LIHC	TCGA-2Y-A9H3-01A	TCGA-2Y-A9H3	ZC3H7B\|L3MBTL2	ZC3H7B	L3MBTL2	22	22	1	1	2	2	2	0.2	41723368	41620024	tier3	In-frame	20152	NA	0

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