Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-6978-01A | TCGA-55-6978 | GCNT2|OSM | GCNT2 | OSM | 6 | 22 | 1 | -1 | 3 | 1 | 1 | 3.6 | 10530069 | 30661133 | tier3 | In-frame | 7014 | NA | 0.35715 |
| UCS | TCGA-NF-A5CP-01A | TCGA-NF-A5CP | UBE2G1|PPIL2 | UBE2G1 | PPIL2 | 17 | 22 | -1 | 1 | 31 | 18 | 14 | 2 | 4269566 | 22024202 | tier1 | Out-of-frame | 19070 | NA | 0 |
| LUAD | TCGA-55-6978-01A | TCGA-55-6978 | HIVEP1|MAPK1 | HIVEP1 | MAPK1 | 6 | 22 | 1 | -1 | 3 | 3 | 3 | 0.29 | 12136125 | 22123609 | tier1 | Out-of-frame | 7794 | NA | 0.39 |
| PRAD | TCGA-J4-A67N-01A | TCGA-J4-A67N | PPAP2A|MAPK1 | PPAP2A | MAPK1 | 5 | 22 | -1 | -1 | 2 | 3 | 3 | 2.2 | 54830400 | 22143097 | tier3 | Out-of-frame | 13210 | NA | 0.38429 |
| STAD | TCGA-CD-8526-01A | TCGA-CD-8526 | DGCR2|SLC25A1 | DGCR2 | SLC25A1 | 22 | 22 | -1 | -1 | 2 | 10 | 9 | 0.08 | 19050715 | 19164463 | tier3 | In-frame | 4741 | NA | 0.35354 |
| BLCA | TCGA-C4-A0F7-01A | TCGA-C4-A0F7 | AP1B1|ADRBK2 | AP1B1 | ADRBK2 | 22 | 22 | -1 | 1 | 19 | 10 | 8 | 0.003 | 29750639 | 26091074 | tier1 | In-frame | 1057 | validated | 0.38512 |
| LGG | TCGA-HT-7686-01A | TCGA-HT-7686 | EHD1|ADRBK2 | EHD1 | ADRBK2 | 11 | 22 | -1 | 1 | 9 | 8 | 8 | 0.47 | 64627396 | 26057543 | tier1 | In-frame | 5400 | NA | 0.38411 |
| BLCA | TCGA-G2-A2ES-01A | TCGA-G2-A2ES | Z83844.2|LGALS1 | Z83844.2 | LGALS1 | 22 | 22 | 1 | 1 | 441 | 507 | 396 | 0.68 | 38084999 | 38072993 | tier1 | In-frame | 20064 | NA | 0 |
| STAD | TCGA-BR-8295-01A | TCGA-BR-8295 | PACSIN2|LGALS1 | PACSIN2 | LGALS1 | 22 | 22 | -1 | 1 | 2 | 15 | 12 | 0.77 | 43272143 | 38072993 | tier3 | Out-of-frame | 12174 | NA | 0.36514 |
| BLCA | TCGA-XF-AAN2-01A | TCGA-XF-AAN2 | LARGE|SLC5A4 | LARGE | SLC5A4 | 22 | 22 | -1 | -1 | 2 | 1 | 1 | 1.1 | 34252728 | 32631080 | tier3 | 5UTR-CDS | 9229 | NA | 0.34228 |
| GBM | TCGA-06-0648-01A | TCGA-06-0648 | XXbac-B461K10.4|XBP1 | XXbac-B461K10.4 | XBP1 | 22 | 22 | -1 | -1 | 8 | 9 | 7 | 0.62 | 18507047 | 29193193 | tier1 | 5UTR-CDS | 20000 | validated | 0 |
| LUAD | TCGA-78-7148-01A | TCGA-78-7148 | RAB1B|XBP1 | RAB1B | XBP1 | 11 | 22 | 1 | -1 | 2 | 1 | 1 | 0.46 | 66044100 | 29196544 | tier2 | 3UTR-5UTR | 14055 | NA | 0 |
| PRAD | TCGA-HC-7210-01A | TCGA-HC-7210 | CYB561|XBP1 | CYB561 | XBP1 | 17 | 22 | -1 | -1 | 2 | 2 | 1 | 0.059 | 61509668 | 29196585 | tier3 | 3UTR-5UTR | 4483 | NA | 0.35635 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | ZNRF3|XBP1 | ZNRF3 | XBP1 | 22 | 22 | 1 | -1 | 9 | 3 | 3 | 0.037 | 29280054 | 29195141 | tier1 | Out-of-frame | 20705 | NA | 0 |
| BRCA | TCGA-AN-A0AT-01A | TCGA-AN-A0AT | MCM5|HMOX1 | MCM5 | HMOX1 | 22 | 22 | 1 | 1 | 26 | 14 | 14 | 0.014 | 35804556 | 35785857 | tier1 | Out-of-frame | 10097 | non-validated | 0.37349 |
| UCS | TCGA-N6-A4V9-01A | TCGA-N6-A4V9 | MCM5|HMOX1 | MCM5 | HMOX1 | 22 | 22 | 1 | 1 | 94 | 35 | 30 | 0.014 | 35796598 | 35789461 | tier1 | Out-of-frame | 10098 | NA | 0.37349 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | ITCH|TAB1 | ITCH | TAB1 | 20 | 22 | 1 | 1 | 2 | 6 | 5 | 2.6 | 32957276 | 39811011 | tier2 | 5UTR-CDS | 8366 | NA | 0.37011 |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | SH3BP1|CACNA1I | SH3BP1 | CACNA1I | 22 | 22 | 1 | 1 | 5 | 7 | 7 | 0.084 | 38039795 | 40057970 | tier1 | In-frame | 15807 | NA | 0 |
| BRCA | TCGA-A7-A4SE-01A | TCGA-A7-A4SE | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 280 | 21 | 19 | 0.003 | 36783852 | 36876884 | tier1 | 5UTR-CDS | 10917 | NA | 0.37799 |
| CESC | TCGA-JW-A5VJ-01A | TCGA-JW-A5VJ | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 24 | 23 | 21 | 0.003 | 36744949 | 36863964 | tier1 | In-frame | 10921 | NA | 0.37799 |
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