Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N8-A4PQ-01A | TCGA-N8-A4PQ | FCHSD2|ABL1 | FCHSD2 | ABL1 | 11 | 9 | -1 | 1 | 2 | 2 | 2 | 3.3 | 72794740 | 133729451 | tier2 | 5UTR-CDS | 6385 | NA | 0.39185 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | CKS2|PCSK5 | CKS2 | PCSK5 | 9 | 9 | 1 | 1 | 7 | 9 | 8 | 0.71 | 91930212 | 78789902 | tier1 | In-frame | 3752 | NA | 0.37442 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | DLG1|PCSK5 | DLG1 | PCSK5 | 3 | 9 | -1 | 1 | 7 | 35 | 33 | 1.7 | 196921296 | 78936338 | tier2 | Out-of-frame | 4877 | NA | 0.38171 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | MGA|SCD | MGA | SCD | 15 | 10 | 1 | 1 | 8 | 3 | 3 | 2.3 | 41962156 | 102107821 | tier2 | Out-of-frame | 10302 | NA | 0.34531 |
| SARC | TCGA-DX-A8BL-01A | TCGA-DX-A8BL | COPE|TMED1 | COPE | TMED1 | 19 | 19 | -1 | -1 | 25 | 31 | 29 | 0.015 | 19023793 | 10946029 | tier1 | In-frame | 4061 | NA | 0.35674 |
| ACC | TCGA-OU-A5PI-01A | TCGA-OU-A5PI | CDS2|MAST3 | CDS2 | MAST3 | 20 | 19 | 1 | 1 | 2 | 2 | 2 | 0.56 | 5167485 | 18232495 | tier2 | Out-of-frame | 3481 | NA | 0.36328 |
| OV | TCGA-24-0970-01B | TCGA-24-0970 | TBL1XR1|MAST3 | TBL1XR1 | MAST3 | 3 | 19 | -1 | 1 | 12 | 4 | 4 | 0.039 | 176914909 | 18245389 | tier1 | 5UTR-CDS | 17549 | NA | 0 |
| BLCA | TCGA-CU-A0YN-01A | TCGA-CU-A0YN | LMBR1L|KCNK6 | LMBR1L | KCNK6 | 12 | 19 | -1 | 1 | 56 | 58 | 53 | 2.7 | 49504267 | 38817233 | tier1 | Out-of-frame | 9391 | NA | 0.34636 |
| HNSC | TCGA-CQ-7063-01A | TCGA-CQ-7063 | CDKN2A|MTAP | CDKN2A | MTAP | 9 | 9 | -1 | 1 | 25 | 28 | 27 | 0.26 | 21974677 | 21815432 | tier1 | In-frame | 3468 | NA | 0.37068 |
| PRAD | TCGA-EJ-A8FO-01A | TCGA-EJ-A8FO | ZNF618|MTAP | ZNF618 | MTAP | 9 | 9 | 1 | 1 | 4 | 2 | 2 | 0.56 | 116638693 | 21815432 | tier1 | In-frame | 20593 | NA | 0 |
| BRCA | TCGA-B6-A3ZX-01A | TCGA-B6-A3ZX | FOXK2|MADCAM1 | FOXK2 | MADCAM1 | 17 | 19 | 1 | 1 | 4 | 4 | 4 | 0.29 | 80478183 | 501669 | tier1 | Out-of-frame | 6659 | NA | 0.36302 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | ELL|MKNK2 | ELL | MKNK2 | 19 | 19 | -1 | -1 | 2 | 7 | 7 | 0.15 | 18569015 | 2046690 | tier2 | Out-of-frame | 5519 | non-validated | 0.38627 |
| BRCA | TCGA-A2-A0T3-01A | TCGA-A2-A0T3 | RPGRIP1L|KLHL22 | RPGRIP1L | KLHL22 | 16 | 22 | -1 | -1 | 5 | 4 | 4 | 0.57 | 53720345 | 20843499 | tier1 | NA | 14975 | NA | 0 |
| HNSC | TCGA-BB-8601-01A | TCGA-BB-8601 | MED15|KLHL22 | MED15 | KLHL22 | 22 | 22 | 1 | -1 | 38 | 24 | 24 | 0.007 | 20862033 | 20843531 | tier1 | CDS-5UTR | 10199 | NA | 0.36585 |
| UCS | TCGA-N6-A4VC-01A | TCGA-N6-A4VC | MKL1|SERPIND1 | MKL1 | SERPIND1 | 22 | 22 | -1 | 1 | 2 | 2 | 1 | 1.4 | 40859225 | 21133585 | tier4 | CDS-5UTR | 10405 | NA | 0.36511 |
| SKCM | TCGA-EE-A184-06A | TCGA-EE-A184 | FREM2|SNAP29 | FREM2 | SNAP29 | 13 | 22 | 1 | 1 | 149 | 113 | 103 | 0.19 | 39271924 | 21241967 | tier1 | In-frame | 6714 | NA | 0.36667 |
| HNSC | TCGA-CV-7255-01A | TCGA-CV-7255 | HIRA|BCL2L13 | HIRA | BCL2L13 | 22 | 22 | -1 | 1 | 19 | 25 | 24 | 2.2 | 19418963 | 18209443 | tier1 | Out-of-frame | 7783 | non-validated | 0.36672 |
| LUAD | TCGA-44-6774-01A | TCGA-44-6774 | SPECC1L|BCL2L13 | SPECC1L | BCL2L13 | 22 | 22 | 1 | 1 | 6 | 3 | 3 | 1.1 | 24666951 | 18185009 | tier1 | 5UTR-CDS | 16691 | NA | 0 |
| SKCM | TCGA-EE-A17Z-06A | TCGA-EE-A17Z | MED15|BCL2L13 | MED15 | BCL2L13 | 22 | 22 | 1 | 1 | 10 | 4 | 3 | 0.15 | 20922918 | 18120868 | tier1 | CDS-5UTR | 10193 | NA | 0.3509 |
| SKCM | TCGA-FS-A1YY-06A | TCGA-FS-A1YY | ZNF507|BCL2L13 | ZNF507 | BCL2L13 | 19 | 22 | 1 | 1 | 59 | 51 | 46 | 1.2 | 32851524 | 18209443 | tier1 | Out-of-frame | 20530 | NA | 0 |
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