Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-06-0214-01A | TCGA-06-0214 | MMS19|CRTAC1 | MMS19 | CRTAC1 | 10 | 10 | -1 | -1 | 7 | 10 | 8 | 0.032 | 99258030 | 99667904 | tier1 | In-frame | 10552 | validated | 0.36148 |
| MESO | TCGA-TS-A7P1-01A | TCGA-TS-A7P1 | ZDHHC14|FKBP5 | ZDHHC14 | FKBP5 | 6 | 6 | 1 | -1 | 7 | 9 | 6 | 0.16 | 157803298 | 35688325 | tier1 | CDS-5UTR | 20196 | NA | 0 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | CLIP1|FKBP5 | CLIP1 | FKBP5 | 12 | 6 | -1 | -1 | 10 | 23 | 22 | 0.13 | 122907068 | 35688325 | tier1 | 5UTR-5UTR | 3796 | NA | 0.37799 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | OSBPL9|FKBP5 | OSBPL9 | FKBP5 | 1 | 6 | 1 | -1 | 19 | 19 | 19 | 3.6 | 52082893 | 35610620 | tier1 | CDS-5UTR | 12099 | NA | 0.38112 |
| SKCM | TCGA-EB-A5SH-06A | TCGA-EB-A5SH | CD2AP|FKBP5 | CD2AP | FKBP5 | 6 | 6 | 1 | -1 | 27 | 11 | 11 | 0.034 | 47501491 | 35688325 | tier1 | CDS-5UTR | 3264 | NA | 0.38756 |
| UCS | TCGA-N6-A4VE-01A | TCGA-N6-A4VE | C6orf106|FKBP5 | C6orf106 | FKBP5 | 6 | 6 | -1 | -1 | 48 | 21 | 20 | 0.33 | 34664223 | 35610620 | tier1 | CDS-5UTR | 2745 | NA | 0 |
| STAD | TCGA-VQ-A91N-01A | TCGA-VQ-A91N | KCTD20|BRPF3 | KCTD20 | BRPF3 | 6 | 6 | 1 | 1 | 4 | 9 | 4 | 0.1 | 36410888 | 36168074 | tier1 | 5UTR-5UTR | 8616 | NA | 0.35792 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | GTF2H3|PGC | GTF2H3 | PGC | 12 | 6 | 1 | -1 | 4 | 7 | 6 | 0.13 | 124123890 | 41705566 | tier1 | In-frame | 7536 | NA | 0.35688 |
| OV | TCGA-09-0367-01A | TCGA-09-0367 | TFEB|PGC | TFEB | PGC | 6 | 6 | -1 | -1 | 2 | 3 | 2 | 1.5 | 41703088 | 41711127 | tier2 | 5UTR-CDS | 17717 | NA | 0 |
| SARC | TCGA-DX-A23T-01A | TCGA-DX-A23T | AGAP2|PGC | AGAP2 | PGC | 12 | 6 | -1 | -1 | 2 | 3 | 3 | 0.062 | 58129152 | 41704742 | tier2 | In-frame | 627 | NA | 0.37722 |
| SARC | TCGA-DX-A23T-01A | TCGA-DX-A23T | GLI3|PGC | GLI3 | PGC | 7 | 6 | -1 | -1 | 12 | 9 | 8 | 0.033 | 42187825 | 41704742 | tier1 | Out-of-frame | 7104 | NA | 0.37985 |
| STAD | TCGA-CD-8525-01A | TCGA-CD-8525 | TFEB|PGC | TFEB | PGC | 6 | 6 | -1 | -1 | 3 | 40 | 14 | 1.5 | 41703088 | 41712546 | tier1 | 5UTR-CDS | 17718 | NA | 0 |
| SARC | TCGA-DX-A3LU-01A | TCGA-DX-A3LU | ZDHHC17|NCR2 | ZDHHC17 | NCR2 | 12 | 6 | 1 | 1 | 119 | 34 | 25 | 0.75 | 77158109 | 41303825 | tier1 | Out-of-frame | 20206 | non-validated | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | KDM4C|JAK2 | KDM4C | JAK2 | 9 | 9 | 1 | 1 | 2 | 4 | 3 | 0.25 | 7103870 | 5123004 | tier2 | Out-of-frame | 8683 | NA | 0.38116 |
| BRCA | TCGA-E9-A22D-01A | TCGA-E9-A22D | TTC13|JAK2 | TTC13 | JAK2 | 1 | 9 | -1 | 1 | 34 | 32 | 30 | 0.61 | 231075132 | 5064883 | tier1 | In-frame | 18827 | NA | 0 |
| CESC | TCGA-PN-A8MA-01A | TCGA-PN-A8MA | C9orf46|JAK2 | C9orf46 | JAK2 | 9 | 9 | -1 | 1 | 204 | 204 | 198 | 0.17 | 5431897 | 5123004 | tier1 | Out-of-frame | 2827 | NA | 0 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | DOCK8|JAK2 | DOCK8 | JAK2 | 9 | 9 | 1 | 1 | 55 | 26 | 21 | 0.4 | 340321 | 5050686 | tier1 | Out-of-frame | 5047 | NA | 0.38272 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | C6orf204|JAK2 | C6orf204 | JAK2 | 6 | 9 | -1 | 1 | 3 | 3 | 3 | 5.1 | 118886692 | 4985940 | tier1 | CDS-5UTR | 2764 | non-validated | 0 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | TICAM1|IL12RB1 | TICAM1 | IL12RB1 | 19 | 19 | -1 | -1 | 70 | 57 | 47 | 0.2 | 4831626 | 18180523 | tier1 | 5UTR-CDS | 17823 | NA | 0 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | NUP214|ABL1 | NUP214 | ABL1 | 9 | 9 | 1 | 1 | 2 | 18 | 14 | 1.6 | 134027281 | 133747516 | tier2 | In-frame | 11936 | NA | 0.39092 |
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