Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-MP-A5C7-01A | TCGA-MP-A5C7 | TMEM59|SUPT16H | TMEM59 | SUPT16H | 1 | 14 | -1 | -1 | 2 | 23 | 16 | 1.4 | 54497690 | 21829491 | tier4 | NA | 18040 | NA | 0 |
| LUSC | TCGA-77-8009-01A | TCGA-77-8009 | MAP1B|SUPT16H | MAP1B | SUPT16H | 5 | 14 | 1 | -1 | 2 | 6 | 6 | 0.047 | 71505395 | 21829491 | tier3 | 3UTR-CDS | 9827 | NA | 0.37493 |
| READ | TCGA-DY-A1DD-01A | TCGA-DY-A1DD | HEXB|SUPT16H | HEXB | SUPT16H | 5 | 14 | 1 | -1 | 2 | 18 | 14 | 0.34 | 74017113 | 21829491 | tier3 | 3UTR-CDS | 7727 | NA | 0.37144 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | MXRA8|SUPT16H | MXRA8 | SUPT16H | 1 | 14 | -1 | -1 | 2 | 9 | 8 | 0.44 | 1288072 | 21829491 | tier3 | 3UTR-CDS | 10873 | NA | 0.37211 |
| TGCT | TCGA-2G-AAFV-01A | TCGA-2G-AAFV | PTMS|SUPT16H | PTMS | SUPT16H | 12 | 14 | 1 | -1 | 2 | 21 | 21 | 0.015 | 6880109 | 21829491 | tier3 | 3UTR-CDS | 13798 | NA | 0.37439 |
| BLCA | TCGA-DK-AA6W-01A | TCGA-DK-AA6W | GABPB1|TRPM7 | GABPB1 | TRPM7 | 15 | 15 | -1 | -1 | 36 | 16 | 16 | 1.1 | 50638569 | 50875356 | tier2 | 5UTR-CDS | 6898 | NA | 0.3799 |
| LUSC | TCGA-77-A5G3-01A | TCGA-77-A5G3 | USP25|CAPN3 | USP25 | CAPN3 | 21 | 15 | 1 | 1 | 3 | 3 | 3 | 0.014 | 17203948 | 42676681 | tier1 | Out-of-frame | 19338 | NA | 0 |
| SARC | TCGA-DX-A6YV-01A | TCGA-DX-A6YV | PHC2|MFSD11 | PHC2 | MFSD11 | 1 | 17 | -1 | 1 | 4 | 10 | 9 | 0.34 | 33815198 | 74763468 | tier1 | 5UTR-CDS | 12686 | NA | 0.36421 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | UBE2D1|MFSD11 | UBE2D1 | MFSD11 | 10 | 17 | 1 | 1 | 2 | 1 | 1 | 1.7 | 60094985 | 74771079 | tier3 | Out-of-frame | 19054 | NA | 0 |
| BLCA | TCGA-UY-A78K-01A | TCGA-UY-A78K | DGCR8|COMT | DGCR8 | COMT | 22 | 22 | 1 | 1 | 52 | 27 | 23 | 0.032 | 20067906 | 19950050 | tier1 | 5UTR-CDS | 4742 | NA | 0.35654 |
| COAD | TCGA-A6-5657-01A | TCGA-A6-5657 | EIF4ENIF1|COMT | EIF4ENIF1 | COMT | 22 | 22 | -1 | 1 | 35 | 33 | 30 | 3.9 | 31867830 | 19948722 | tier1 | CDS-5UTR | 5459 | NA | 0.3523 |
| GBM | TCGA-32-2638-01A | TCGA-32-2638 | MED15|COMT | MED15 | COMT | 22 | 22 | 1 | 1 | 5 | 13 | 11 | 0.083 | 20891491 | 19948722 | tier1 | CDS-5UTR | 10196 | NA | 0.35451 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | RANBP17|GABRP | RANBP17 | GABRP | 5 | 5 | 1 | 1 | 5 | 4 | 3 | 0.17 | 170308900 | 170238960 | tier1 | Out-of-frame | 14254 | NA | 0 |
| PRAD | TCGA-KC-A4BV-01A | TCGA-KC-A4BV | SEPT9|CRAT | SEPT9 | CRAT | 17 | 9 | 1 | -1 | 10 | 4 | 3 | 0.44 | 75303279 | 131866585 | tier1 | 5UTR-CDS | 15605 | NA | 0 |
| STAD | TCGA-BR-8080-01A | TCGA-BR-8080 | PPP2R4|CRAT | PPP2R4 | CRAT | 9 | 9 | 1 | -1 | 2 | 11 | 9 | 0.28 | 131873910 | 131866585 | tier4 | Out-of-frame | 13402 | NA | 0.36109 |
| PRAD | TCGA-EJ-A65J-01A | TCGA-EJ-A65J | FRA10AC1|PDE6C | FRA10AC1 | PDE6C | 10 | 10 | -1 | 1 | 9 | 6 | 6 | 0.03 | 95430527 | 95418658 | tier1 | In-frame | 6703 | NA | 0.3439 |
| LUSC | TCGA-60-2698-01A | TCGA-60-2698 | MED20|TLL2 | MED20 | TLL2 | 6 | 10 | -1 | -1 | 20 | 6 | 6 | 2 | 41884523 | 98240216 | tier1 | In-frame | 10207 | non-validated | 0.3622 |
| BRCA | TCGA-E2-A576-01A | TCGA-E2-A576 | NRBF2|CYP26A1 | NRBF2 | CYP26A1 | 10 | 10 | 1 | 1 | 15 | 5 | 5 | 1.8 | 64893260 | 94835583 | tier1 | In-frame | 11733 | NA | 0.36271 |
| PRAD | TCGA-EJ-A7NN-01A | TCGA-EJ-A7NN | SUFU|CYP26A1 | SUFU | CYP26A1 | 10 | 10 | 1 | 1 | 16 | 7 | 7 | 0.4 | 104377185 | 94835583 | tier4 | In-frame | 17161 | NA | 0 |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | RRP12|CRTAC1 | RRP12 | CRTAC1 | 10 | 10 | -1 | -1 | 15 | 15 | 13 | 0.45 | 99132803 | 99771094 | tier1 | In-frame | 15136 | NA | 0 |
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