TCDA Transcript fusion

  FCG

  Home

  PDGs

  Search

  Expression

  Copy Number

  Mutation

  Transcript Fusion

  Download

  Help

  About

Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
Showing page 354	first page \| previous page \| next page \| last page

Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
READ	TCGA-AG-3732-01A	TCGA-AG-3732	CEP112\|APOH	CEP112	APOH	17	17	-1	-1	5	5	3	0.52	64171162	64216860	tier1	Out-of-frame	3531	NA	0.3546
LUSC	TCGA-66-2788-01A	TCGA-66-2788	TULP4\|ESR1	TULP4	ESR1	6	6	1	1	10	9	8	0.06	158735300	152201790	tier1	Out-of-frame	18962	NA	0
SARC	TCGA-HB-A3YV-01A	TCGA-HB-A3YV	SYNE1\|ESR1	SYNE1	ESR1	6	6	-1	1	17	8	7	0.15	152565672	152415520	tier1	Out-of-frame	17240	NA	0
BRCA	TCGA-AR-A0TT-01A	TCGA-AR-A0TT	MAK16\|ANGPT2	MAK16	ANGPT2	8	8	1	-1	10	16	15	0.22	33347857	6390008	tier1	In-frame	9779	NA	0.36751
BRCA	TCGA-C8-A12W-01A	TCGA-C8-A12W	RBM23\|SLC7A8	RBM23	SLC7A8	14	14	-1	-1	3	4	2	0.39	23388208	23635749	tier1	5UTR-CDS	14452	NA	0
BLCA	TCGA-DK-A3IK-01A	TCGA-DK-A3IK	ATG2B\|SLC22A17	ATG2B	SLC22A17	14	14	-1	-1	30	18	15	0.29	96782870	23816145	tier1	Out-of-frame	1622	NA	0.34585
GBM	TCGA-06-0125-01A	TCGA-06-0125	ARID1A\|RNF31	ARID1A	RNF31	1	14	1	1	10	43	36	1.1	27094490	24624366	tier1	In-frame	1341	validated	0.36415
LIHC	TCGA-BC-A8YO-01A	TCGA-BC-A8YO	IRF9\|RNF31	IRF9	RNF31	14	14	1	1	180	228	200	0.79	24631533	24629448	tier1	Out-of-frame	8347	NA	0.3605
GBM	TCGA-28-2514-01A	TCGA-28-2514	SPRED2\|G2E3	SPRED2	G2E3	2	14	-1	1	7	30	25	3	65659096	31050282	tier1	CDS-5UTR	16773	NA	0
BLCA	TCGA-DK-A3WX-01A	TCGA-DK-A3WX	KRT14\|SUPT16H	KRT14	SUPT16H	17	14	-1	-1	2	37	30	0.96	39738531	21829491	tier3	3UTR-CDS	9131	NA	0.37499
BLCA	TCGA-GV-A3QH-01A	TCGA-GV-A3QH	UPK2\|SUPT16H	UPK2	SUPT16H	11	14	1	-1	2	14	9	0.55	118829269	21829491	tier4	3UTR-CDS	19276	NA	0
CESC	TCGA-FU-A3HY-01A	TCGA-FU-A3HY	KRT14\|SUPT16H	KRT14	SUPT16H	17	14	-1	-1	2	40	27	0.96	39738531	21829491	tier3	3UTR-CDS	9132	NA	0.37499
COAD	TCGA-F4-6463-01A	TCGA-F4-6463	CKB\|SUPT16H	CKB	SUPT16H	14	14	-1	-1	2	147	119	0.99	103986004	21829491	tier4	3UTR-CDS	3750	NA	0.37083
HNSC	TCGA-CR-6474-01A	TCGA-CR-6474	AHNAK\|SUPT16H	AHNAK	SUPT16H	11	14	-1	-1	2	9	7	0.26	62283375	21829491	tier4	3UTR-CDS	695	NA	0.37571
HNSC	TCGA-CN-6012-01A	TCGA-CN-6012	KRT13\|SUPT16H	KRT13	SUPT16H	17	14	-1	-1	2	6	6	0.98	39657233	21829491	tier4	3UTR-CDS	9126	NA	0.37198
HNSC	TCGA-D6-A6EN-01A	TCGA-D6-A6EN	MYL6\|SUPT16H	MYL6	SUPT16H	12	14	1	-1	2	17	9	0.83	56555358	21829491	tier4	3UTR-CDS	10927	NA	0.37814
HNSC	TCGA-CR-5250-01A	TCGA-CR-5250	TMEM54\|SUPT16H	TMEM54	SUPT16H	1	14	-1	-1	2	9	8	2	33360196	21829491	tier3	3UTR-CDS	18035	non-validated	0
LUAD	TCGA-44-5643-01A	TCGA-44-5643	ATN1\|SUPT16H	ATN1	SUPT16H	12	14	1	-1	2	3	2	0.059	7051482	21829491	tier4	NA	1655	NA	0.37864
LUAD	TCGA-55-8620-01A	TCGA-55-8620	CUL4A\|SUPT16H	CUL4A	SUPT16H	13	14	1	-1	2	12	9	0.62	113919391	21829491	tier2	3UTR-CDS	4437	NA	0.37712
LUAD	TCGA-55-7913-01B	TCGA-55-7913	PLXNB2\|SUPT16H	PLXNB2	SUPT16H	22	14	-1	-1	2	15	1	0.31	50713408	21829491	tier3	3UTR-CDS	13075	NA	0.38155

Showing page 354

first page | previous page | next page | last page

  TCGA

  GDC

  NCI