Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | LEMD3|LYZ | LEMD3 | LYZ | 12 | 12 | 1 | 1 | 86 | 64 | 60 | 0.021 | 65564898 | 69743888 | tier1 | In-frame | 9287 | NA | 0.36497 |
| LIHC | TCGA-BC-A3KF-01A | TCGA-BC-A3KF | YEATS4|LYZ | YEATS4 | LYZ | 12 | 12 | 1 | 1 | 35 | 29 | 24 | 0.27 | 69764755 | 69743888 | tier1 | In-frame | 20027 | NA | 0 |
| LUAD | TCGA-69-7760-01A | TCGA-69-7760 | FRS2|LYZ | FRS2 | LYZ | 12 | 12 | 1 | 1 | 6 | 3 | 3 | 1.3 | 69864310 | 69743888 | tier1 | 5UTR-CDS | 6761 | NA | 0.3788 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | ATF7|LYZ | ATF7 | LYZ | 12 | 12 | -1 | 1 | 9 | 6 | 6 | 0.1 | 54020063 | 69746000 | tier1 | 5UTR-CDS | 1608 | NA | 0.37957 |
| SARC | TCGA-DX-A6BE-01A | TCGA-DX-A6BE | LEMD3|LYZ | LEMD3 | LYZ | 12 | 12 | 1 | 1 | 59 | 119 | 112 | 0.021 | 65564898 | 69743888 | tier1 | In-frame | 9288 | NA | 0.36497 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | TMTC2|LYZ | TMTC2 | LYZ | 12 | 12 | 1 | 1 | 64 | 40 | 34 | 0.34 | 83379825 | 69743888 | tier1 | Out-of-frame | 18302 | non-validated | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | YEATS4|LYZ | YEATS4 | LYZ | 12 | 12 | 1 | 1 | 28 | 214 | 194 | 0.27 | 69764755 | 69743888 | tier1 | In-frame | 20028 | NA | 0 |
| LUSC | TCGA-39-5019-01A | TCGA-39-5019 | C3orf55|CHRD | C3orf55 | CHRD | 3 | 3 | 1 | 1 | 11 | 5 | 2 | 0.65 | 157261298 | 184106375 | tier1 | 5UTR-CDS | 2714 | NA | 0 |
| HNSC | TCGA-CN-4731-01A | TCGA-CN-4731 | SCAF1|FLT3LG | SCAF1 | FLT3LG | 19 | 19 | 1 | 1 | 45 | 16 | 13 | 0.55 | 50156962 | 49982166 | tier1 | Out-of-frame | 15360 | NA | 0 |
| LAML | TCGA-AB-2912-03A | TCGA-AB-2912 | RPS11|FLT3LG | RPS11 | FLT3LG | 19 | 19 | 1 | 1 | 134 | 95 | 81 | 100 | 50001303 | 49977860 | tier1 | CDS-5UTR | 15033 | NA | 0 |
| LUSC | TCGA-56-8304-01A | TCGA-56-8304 | PRR12|FLT3LG | PRR12 | FLT3LG | 19 | 19 | 1 | 1 | 3 | 3 | 3 | 0.25 | 50105175 | 49983555 | tier1 | Out-of-frame | 13615 | NA | 0.35993 |
| PRAD | TCGA-ZG-A9LN-01A | TCGA-ZG-A9LN | BCL2L12|FLT3LG | BCL2L12 | FLT3LG | 19 | 19 | 1 | 1 | 4 | 6 | 6 | 0.067 | 50173745 | 49989272 | tier1 | 3UTR-3UTR | 2021 | NA | 0.36532 |
| UCEC | TCGA-AJ-A3BD-01A | TCGA-AJ-A3BD | RCN3|FLT3LG | RCN3 | FLT3LG | 19 | 19 | 1 | 1 | 4 | 3 | 3 | 0.067 | 50042436 | 49989272 | tier1 | CDS-3UTR | 14513 | NA | 0 |
| BRCA | TCGA-B6-A402-01A | TCGA-B6-A402 | PCNT|MCOLN1 | PCNT | MCOLN1 | 21 | 19 | 1 | 1 | 11 | 23 | 20 | 0.25 | 47811291 | 7598409 | tier1 | Out-of-frame | 12427 | NA | 0.35686 |
| UCS | TCGA-N8-A4PN-01A | TCGA-N8-A4PN | HNRNPM|MCOLN1 | HNRNPM | MCOLN1 | 19 | 19 | 1 | 1 | 58 | 36 | 35 | 0.061 | 8527465 | 7592406 | tier1 | Out-of-frame | 7905 | NA | 0.37812 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | UTRN|LAMB4 | UTRN | LAMB4 | 6 | 7 | 1 | -1 | 13 | 14 | 13 | 2.6 | 144769905 | 107678040 | tier1 | Out-of-frame | 19460 | NA | 0 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | CBLL1|SLC26A4 | CBLL1 | SLC26A4 | 7 | 7 | 1 | 1 | 3 | 2 | 2 | 0.41 | 107389492 | 107302084 | tier1 | CDS-5UTR | 3081 | NA | 0.3551 |
| LIHC | TCGA-FV-A3I1-01A | TCGA-FV-A3I1 | TMEM131|RAPGEF4 | TMEM131 | RAPGEF4 | 2 | 2 | -1 | 1 | 2 | 3 | 3 | 1 | 98458278 | 173855538 | tier3 | In-frame | 17958 | non-validated | 0 |
| BLCA | TCGA-G2-AA3F-01A | TCGA-G2-AA3F | PKP2|AC013461.1 | PKP2 | AC013461.1 | 12 | 2 | -1 | 1 | 4 | 7 | 6 | 0.32 | 33021861 | 174068524 | tier1 | In-frame | 12927 | NA | 0.36526 |
| PRAD | TCGA-EJ-5514-01A | TCGA-EJ-5514 | ARMC8|TF | ARMC8 | TF | 3 | 3 | 1 | 1 | 4 | 1 | 1 | 0.042 | 137906441 | 133483026 | tier3 | 5UTR-CDS | 1420 | NA | 0.362 |
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