TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PRAD	TCGA-J4-A67T-01A	TCGA-J4-A67T	SSFA2\|PTPN4	SSFA2	PTPN4	2	2	1	1	2	3	2	0.16	182787139	120620112	tier3	In-frame	16910	NA	0
COAD	TCGA-A6-2675-01A	TCGA-A6-2675	RALY\|EDEM2	RALY	EDEM2	20	20	1	-1	8	6	5	0.54	32581937	33805864	tier1	5UTR-5UTR	14241	NA	0
LUAD	TCGA-44-3918-01A	TCGA-44-3918	C9orf86\|EDEM2	C9orf86	EDEM2	9	20	1	-1	5	5	4	0.29	139718111	33804674	tier1	CDS-5UTR	2831	non-validated	0
SARC	TCGA-SI-A71O-01A	TCGA-SI-A71O	RALY\|ATRN	RALY	ATRN	20	20	1	1	8	7	5	0.046	32619410	3515900	tier2	5UTR-CDS	14238	NA	0
MESO	TCGA-SC-A6LM-01A	TCGA-SC-A6LM	PARK2\|SMOX	PARK2	SMOX	6	20	-1	1	3	4	4	1.2	161969886	4155677	tier1	CDS-5UTR	12290	NA	0.37203
BRCA	TCGA-A2-A0YM-01A	TCGA-A2-A0YM	CLIP1\|SLC24A6	CLIP1	SLC24A6	12	12	-1	-1	6	2	2	0.69	122861936	113748160	tier1	Out-of-frame	3801	NA	0.36186
BRCA	TCGA-E2-A1LL-01A	TCGA-E2-A1LL	ANAPC5\|KDM2B	ANAPC5	KDM2B	12	12	-1	-1	3	3	3	0.14	121764899	121958903	tier1	Out-of-frame	891	non-validated	0.36126
STAD	TCGA-BR-8373-01A	TCGA-BR-8373	ANAPC5\|KDM2B	ANAPC5	KDM2B	12	12	-1	-1	13	25	24	0.14	121773336	121868272	tier1	Out-of-frame	890	non-validated	0.36126
BRCA	TCGA-A2-A0SU-01A	TCGA-A2-A0SU	ZNF18\|TASP1	ZNF18	TASP1	17	20	-1	-1	4	3	3	0.81	11887430	13398168	tier1	In-frame	20386	NA	0
LUAD	TCGA-64-1681-01A	TCGA-64-1681	MACROD2\|TASP1	MACROD2	TASP1	20	20	1	-1	2	3	3	1.5	15480492	13610799	tier2	CDS-5UTR	9747	NA	0.35174
LUAD	TCGA-50-5072-01A	TCGA-50-5072	RRBP1\|TASP1	RRBP1	TASP1	20	20	-1	-1	9	3	2	1.5	17614105	13398168	tier1	Out-of-frame	15122	NA	0
LUAD	TCGA-91-6831-01A	TCGA-91-6831	RRBP1\|TASP1	RRBP1	TASP1	20	20	-1	-1	50	26	24	1.5	17614105	13398168	tier1	Out-of-frame	15123	NA	0
LUSC	TCGA-33-AAS8-01A	TCGA-33-AAS8	DTD1\|TASP1	DTD1	TASP1	20	20	1	-1	4	6	6	0.4	18576885	13246829	tier1	CDS-3UTR	5150	NA	0.34848
LUSC	TCGA-34-5232-01A	TCGA-34-5232	C12orf51\|PEBP1	C12orf51	PEBP1	12	12	-1	1	7	25	24	0.27	112743868	118575844	tier1	In-frame	2436	NA	0
PRAD	TCGA-G9-6348-01A	TCGA-G9-6348	PRR15L\|KCNH4	PRR15L	KCNH4	17	17	-1	-1	96	50	42	2.3	46035023	40309136	tier1	5UTR-3UTR	13625	NA	0.3474
BRCA	TCGA-EW-A1PB-01A	TCGA-EW-A1PB	PGS1\|BIRC5	PGS1	BIRC5	17	17	1	1	27	26	25	0.21	76395618	76219546	tier4	Out-of-frame	12671	non-validated	0.37234
PAAD	TCGA-3A-A9J0-01A	TCGA-3A-A9J0	CASZ1\|SLC9A1	CASZ1	SLC9A1	1	1	-1	-1	31	26	25	0.009	10753931	27440777	tier1	In-frame	3035	NA	0.36664
BLCA	TCGA-BT-A0S7-01A	TCGA-BT-A0S7	YEATS4\|LYZ	YEATS4	LYZ	12	12	1	1	198	107	95	0.27	69759664	69743888	tier1	Out-of-frame	20029	NA	0
BRCA	TCGA-A8-A06Z-01A	TCGA-A8-A06Z	FRS2\|LYZ	FRS2	LYZ	12	12	1	1	2368	1962	1840	1.3	69925836	69743888	tier1	5UTR-CDS	6762	NA	0.3788
BRCA	TCGA-A8-A07O-01A	TCGA-A8-A07O	FRS2\|LYZ	FRS2	LYZ	12	12	1	1	51	26	24	1.3	69925836	69743888	tier1	5UTR-CDS	6763	NA	0.3788

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