Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-C5-A7X3-01A | TCGA-C5-A7X3 | FOSB|ITPKC | FOSB | ITPKC | 19 | 19 | 1 | 1 | 3 | 1 | 1 | 0.13 | 45974207 | 41231245 | tier3 | In-frame | 6635 | NA | 0.35194 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | MEGF8|ITPKC | MEGF8 | ITPKC | 19 | 19 | 1 | 1 | 5 | 3 | 3 | 0.031 | 42875634 | 41231245 | tier1 | In-frame | 10242 | NA | 0.34057 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | MAP1S|CEACAM6 | MAP1S | CEACAM6 | 19 | 19 | 1 | 1 | 340 | 1408 | 1269 | 1.1 | 17835017 | 42270091 | tier1 | Out-of-frame | 9828 | validated | 0.36658 |
| BRCA | TCGA-A2-A25A-01A | TCGA-A2-A25A | KIAA0182|HSD17B2 | KIAA0182 | HSD17B2 | 16 | 16 | 1 | 1 | 3 | 4 | 3 | 0.38 | 85667738 | 82101775 | tier1 | In-frame | 8743 | NA | 0.36791 |
| LUAD | TCGA-MP-A4TF-01A | TCGA-MP-A4TF | GPT2|HSD17B2 | GPT2 | HSD17B2 | 16 | 16 | 1 | 1 | 6 | 3 | 3 | 2.4 | 46956328 | 82104547 | tier1 | Out-of-frame | 7389 | NA | 0.34325 |
| BRCA | TCGA-BH-A18L-01A | TCGA-BH-A18L | LRP5|NOX4 | LRP5 | NOX4 | 11 | 11 | 1 | -1 | 4 | 3 | 3 | 0.81 | 68207384 | 89088211 | tier1 | Out-of-frame | 9534 | NA | 0.37226 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | NFRKB|NOX4 | NFRKB | NOX4 | 11 | 11 | -1 | -1 | 4 | 1 | 1 | 2.7 | 129755330 | 89135710 | tier2 | Out-of-frame | 11516 | NA | 0.34849 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | ZFP91|NOX4 | ZFP91 | NOX4 | 11 | 11 | 1 | -1 | 8 | 6 | 6 | 0.23 | 58352357 | 89088211 | tier1 | In-frame | 20276 | NA | 0 |
| LUAD | TCGA-55-8615-01A | TCGA-55-8615 | RAB1B|MTMR2 | RAB1B | MTMR2 | 11 | 11 | 1 | -1 | 7 | 5 | 5 | 0.34 | 66036164 | 95598840 | tier1 | Out-of-frame | 14054 | NA | 0 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | ZNF253|HSD17B14 | ZNF253 | HSD17B14 | 19 | 19 | 1 | -1 | 3 | 13 | 11 | 100 | 19976808 | 49337615 | tier1 | Out-of-frame | 20419 | non-validated | 0 |
| BRCA | TCGA-A1-A0SO-01A | TCGA-A1-A0SO | KHDC1|NLK | KHDC1 | NLK | 6 | 17 | -1 | 1 | 2 | 3 | 3 | 0.71 | 74001721 | 26449629 | tier4 | In-frame | 8715 | NA | 0.37062 |
| BRCA | TCGA-3C-AALK-01A | TCGA-3C-AALK | RFFL|NLK | RFFL | NLK | 17 | 17 | -1 | 1 | 17 | 15 | 15 | 0.086 | 33416124 | 26495474 | tier1 | 5UTR-CDS | 14590 | NA | 0 |
| BRCA | TCGA-AN-A049-01A | TCGA-AN-A049 | TADA2A|NLK | TADA2A | NLK | 17 | 17 | 1 | 1 | 6 | 1 | 1 | 0.091 | 35787108 | 26449629 | tier2 | Out-of-frame | 17309 | NA | 0 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | WRB|NLK | WRB | NLK | 21 | 17 | 1 | 1 | 22 | 19 | 19 | 2.8 | 40752412 | 26490569 | tier1 | Out-of-frame | 19907 | NA | 0 |
| BRCA | TCGA-AO-A1KT-01A | TCGA-AO-A1KT | C10orf26|ADAMTS2 | C10orf26 | ADAMTS2 | 10 | 5 | 1 | -1 | 6 | 5 | 5 | 0.28 | 104503900 | 178700065 | tier1 | In-frame | 2314 | NA | 0 |
| PRAD | TCGA-HI-7168-01A | TCGA-HI-7168 | AGAP1|ADAMTS2 | AGAP1 | ADAMTS2 | 2 | 5 | 1 | -1 | 4 | 3 | 3 | 0.12 | 236653483 | 178553131 | tier1 | In-frame | 608 | NA | 0.36806 |
| OV | TCGA-13-0885-01A | TCGA-13-0885 | CNOT1|CETP | CNOT1 | CETP | 16 | 16 | -1 | 1 | 2 | 2 | 1 | 0.54 | 58663632 | 57003298 | tier2 | 5UTR-CDS | 3921 | NA | 0.36212 |
| SKCM | TCGA-EB-A82B-01A | TCGA-EB-A82B | GOT2|MMP2 | GOT2 | MMP2 | 16 | 16 | -1 | 1 | 4 | 6 | 6 | 3.9 | 58752100 | 55516821 | tier1 | In-frame | 7306 | NA | 0.37446 |
| LUAD | TCGA-55-A4DF-01A | TCGA-55-A4DF | KIAA0247|TXNDC16 | KIAA0247 | TXNDC16 | 14 | 14 | 1 | -1 | 2 | 1 | 1 | 0.88 | 70078545 | 53011089 | tier3 | 5UTR-5UTR | 8769 | NA | 0.34182 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | B4GALT5|GNAS | B4GALT5 | GNAS | 20 | 20 | -1 | 1 | 65 | 119 | 114 | 0.62 | 48330113 | 57470667 | tier1 | In-frame | 1878 | NA | 0.37233 |
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