Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LAML | TCGA-AB-2915-03A | TCGA-AB-2915 | RUNX1|MECOM | RUNX1 | MECOM | 21 | 3 | -1 | -1 | 45 | 43 | 41 | 1.5 | 36206707 | 169099312 | tier1 | In-frame | 15180 | NA | 0 |
| SKCM | TCGA-W3-A828-06A | TCGA-W3-A828 | GOLIM4|MECOM | GOLIM4 | MECOM | 3 | 3 | -1 | -1 | 34 | 12 | 11 | 3.1 | 167742314 | 168861620 | tier1 | In-frame | 7275 | NA | 0.32787 |
| UCEC | TCGA-PG-A7D5-01A | TCGA-PG-A7D5 | TPX2|MECOM | TPX2 | MECOM | 20 | 3 | 1 | -1 | 2 | 5 | 5 | 0.74 | 30330450 | 168861620 | tier2 | 5UTR-CDS | 18527 | NA | 0 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | ARID1B|PREP | ARID1B | PREP | 6 | 6 | 1 | -1 | 66 | 29 | 26 | 0.85 | 157150555 | 105845802 | tier1 | In-frame | 1355 | NA | 0.36702 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | USP6NL|PREP | USP6NL | PREP | 10 | 6 | -1 | -1 | 5 | 3 | 1 | 6.1 | 11639630 | 105845802 | tier2 | Out-of-frame | 19426 | NA | 0 |
| THCA | TCGA-CE-A13K-01A | TCGA-CE-A13K | C6orf35|PREP | C6orf35 | PREP | 6 | 6 | -1 | -1 | 5 | 5 | 5 | 0.053 | 157739814 | 105845802 | tier1 | In-frame | 2770 | NA | 0 |
| BLCA | TCGA-BL-A13J-01A | TCGA-BL-A13J | FAM102B|SLC25A24 | FAM102B | SLC25A24 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 0.056 | 109143308 | 108728576 | tier2 | In-frame | 5996 | non-validated | 0.34921 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | ZNF292|MAP3K4 | ZNF292 | MAP3K4 | 6 | 6 | 1 | 1 | 4 | 6 | 6 | 0.6 | 87865477 | 161491640 | tier1 | In-frame | 20445 | non-validated | 0 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | XRCC5|ABCB1 | XRCC5 | ABCB1 | 2 | 7 | 1 | -1 | 40 | 32 | 32 | 0.015 | 216997110 | 87133765 | tier1 | In-frame | 19982 | NA | 0 |
| LUAD | TCGA-78-7161-01A | TCGA-78-7161 | SHANK2|WNT11 | SHANK2 | WNT11 | 11 | 11 | -1 | -1 | 6 | 8 | 6 | 0.62 | 70644548 | 75902900 | tier1 | Out-of-frame | 15864 | NA | 0 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | TCF12|MGST2 | TCF12 | MGST2 | 15 | 4 | 1 | 1 | 10 | 7 | 7 | 0.17 | 57213296 | 140599697 | tier1 | In-frame | 17582 | non-validated | 0 |
| OV | TCGA-29-A5NZ-01A | TCGA-29-A5NZ | FRAS1|MGST2 | FRAS1 | MGST2 | 4 | 4 | 1 | 1 | 9 | 57 | 53 | 0.35 | 79322041 | 140616351 | tier1 | Out-of-frame | 6708 | NA | 0.34491 |
| LGG | TCGA-HT-7882-01A | TCGA-HT-7882 | HOMER1|MAST2 | HOMER1 | MAST2 | 5 | 1 | -1 | 1 | 5 | 2 | 2 | 0.35 | 78808593 | 46348036 | tier1 | Out-of-frame | 7917 | NA | 0.3816 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | WDR25|MAST2 | WDR25 | MAST2 | 14 | 1 | 1 | 1 | 2 | 1 | 1 | 0.43 | 100848083 | 46425058 | tier2 | Out-of-frame | 19765 | NA | 0 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | NFX1|DNAJA1 | NFX1 | DNAJA1 | 9 | 9 | 1 | 1 | 18 | 33 | 31 | 1.4 | 33290595 | 33029883 | tier1 | In-frame | 11520 | NA | 0.38013 |
| HNSC | TCGA-CV-7428-01A | TCGA-CV-7428 | SMU1|B4GALT1 | SMU1 | B4GALT1 | 9 | 9 | -1 | -1 | 3 | 7 | 3 | 1.1 | 33068822 | 33104779 | tier1 | In-frame | 16436 | NA | 0 |
| BLCA | TCGA-DK-A6B5-01A | TCGA-DK-A6B5 | FSCN1|EIF2AK1 | FSCN1 | EIF2AK1 | 7 | 7 | 1 | -1 | 135 | 322 | 302 | 0.44 | 5633399 | 6066592 | tier1 | Out-of-frame | 6805 | NA | 0.37526 |
| KIRC | TCGA-DV-5576-01A | TCGA-DV-5576 | RNF216|EIF2AK1 | RNF216 | EIF2AK1 | 7 | 7 | -1 | -1 | 97 | 58 | 54 | 0.9 | 5756347 | 6064432 | tier1 | In-frame | 14825 | NA | 0 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | TRA2A|EPDR1 | TRA2A | EPDR1 | 7 | 7 | -1 | 1 | 29 | 46 | 44 | 2.1 | 23571408 | 37988442 | tier1 | Out-of-frame | 18534 | NA | 0 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | AC008537.4|ITPKC | AC008537.4 | ITPKC | 19 | 19 | 1 | 1 | 3 | 1 | 1 | 2.2 | 41448111 | 41242891 | tier4 | Out-of-frame | 151 | NA | 0.32639 |
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