TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-96-7544-01A	TCGA-96-7544	KIAA1432\|EPYC	KIAA1432	EPYC	9	12	1	-1	40	27	26	1.3	5690038	91372039	tier1	Out-of-frame	8875	NA	0.34522
SARC	TCGA-WK-A8XO-01A	TCGA-WK-A8XO	B4GALNT1\|EPYC	B4GALNT1	EPYC	12	12	-1	-1	4	10	7	0.58	58025698	91396355	tier1	CDS-5UTR	1861	NA	0.34435
SARC	TCGA-DX-A1L4-01A	TCGA-DX-A1L4	STAM\|EPYC	STAM	EPYC	10	12	1	-1	17	13	11	0.16	17686378	91372039	tier1	Out-of-frame	16993	NA	0
SARC	TCGA-SG-A6Z7-01A	TCGA-SG-A6Z7	SYT1\|EPYC	SYT1	EPYC	12	12	1	-1	133	112	105	0.075	79441142	91396355	tier1	5UTR-5UTR	17270	NA	0
BLCA	TCGA-4Z-AA87-01A	TCGA-4Z-AA87	LUC7L\|SLC27A5	LUC7L	SLC27A5	16	19	-1	-1	15	24	19	0.61	270648	59012777	tier1	Out-of-frame	9674	NA	0.35888
LIHC	TCGA-DD-A4NE-01A	TCGA-DD-A4NE	ZBTB7B\|ZMPSTE24	ZBTB7B	ZMPSTE24	1	1	1	1	26	15	13	1.4	154975419	40733458	tier1	5UTR-CDS	20123	non-validated	0
PRAD	TCGA-CH-5788-01A	TCGA-CH-5788	GPBP1L1\|ZMPSTE24	GPBP1L1	ZMPSTE24	1	1	-1	1	2	4	4	0.41	46120215	40733458	tier3	In-frame	7322	non-validated	0.35314
ACC	TCGA-OR-A5JY-01A	TCGA-OR-A5JY	FGD4\|SLCO1A2	FGD4	SLCO1A2	12	12	1	-1	12	5	4	0.19	32552893	21487643	tier1	CDS-5UTR	6436	NA	0.37111
LGG	TCGA-TQ-A7RH-01A	TCGA-TQ-A7RH	CNOT2\|SLCO1A2	CNOT2	SLCO1A2	12	12	1	-1	3	1	1	0.031	70672054	21445270	tier3	In-frame	3934	NA	0.35368
SKCM	TCGA-GN-A26D-06A	TCGA-GN-A26D	ZDHHC9\|SLCO1A2	ZDHHC9	SLCO1A2	X	12	-1	-1	116	46	42	1.3	128977235	21487643	tier1	5UTR-5UTR	20232	NA	0
HNSC	TCGA-KU-A6H7-01A	TCGA-KU-A6H7	CPSF6\|COL16A1	CPSF6	COL16A1	12	1	1	-1	216	122	108	0.009	69656342	32118454	tier1	3UTR-CDS	4151	NA	0.36481
THYM	TCGA-X7-A8D9-01A	TCGA-X7-A8D9	ATXN10\|COL16A1	ATXN10	COL16A1	22	1	1	-1	14	12	11	0.68	46068059	32158110	tier1	Out-of-frame	1808	NA	0.35135
LIHC	TCGA-BC-A3KF-01A	TCGA-BC-A3KF	GNB2L1\|APOB	GNB2L1	APOB	5	2	-1	-1	2	9	2	2.6	180663934	21250937	tier3	3UTR-CDS	7218	NA	0.38111
LIHC	TCGA-CC-A3MC-01A	TCGA-CC-A3MC	GNB2L1\|APOB	GNB2L1	APOB	5	2	-1	-1	2	19	11	2.6	180663934	21250937	tier3	3UTR-CDS	7219	NA	0.38111
BRCA	TCGA-PL-A8LZ-01A	TCGA-PL-A8LZ	CENPO\|NCOA1	CENPO	NCOA1	2	2	1	1	4	5	5	1.2	25040710	24985556	tier1	3UTR-CDS	3525	NA	0.375
BRCA	TCGA-BH-A5J0-01A	TCGA-BH-A5J0	RAB10\|NCOA1	RAB10	NCOA1	2	2	1	1	8	5	4	0.93	26257604	24866835	tier1	CDS-5UTR	14035	NA	0
SKCM	TCGA-FS-A1ZK-06A	TCGA-FS-A1ZK	COMMD9\|CD59	COMMD9	CD59	11	11	-1	-1	97	26	26	100	36300027	33720060	tier1	Out-of-frame	4057	validated	0.36656
LGG	TCGA-TQ-A7RK-02B	TCGA-TQ-A7RK	DTNA\|CD82	DTNA	CD82	18	11	1	1	10	5	5	0.53	32346005	44609025	tier1	CDS-5UTR	5156	non-validated	0.37575
STAD	TCGA-BR-8485-01A	TCGA-BR-8485	TEAD4\|CD82	TEAD4	CD82	12	11	1	1	2	4	4	0.48	3069206	44609025	tier3	5UTR-5UTR	17640	NA	0
UCEC	TCGA-B5-A5OD-01A	TCGA-B5-A5OD	PPFIA1\|CD82	PPFIA1	CD82	11	11	1	1	63	63	57	1.5	70118542	44609025	tier1	CDS-5UTR	13250	NA	0.3737

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