Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-GV-A40G-01A | TCGA-GV-A40G | CTD-2192J16.17|COL5A3 | CTD-2192J16.17 | COL5A3 | 19 | 19 | -1 | -1 | 14 | 4 | 4 | 3.5 | 12662144 | 10112557 | tier1 | In-frame | 4317 | NA | 0.36306 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | ASPSCR1|COL5A3 | ASPSCR1 | COL5A3 | 17 | 19 | 1 | -1 | 7 | 3 | 3 | 0.13 | 79937115 | 10114821 | tier1 | Out-of-frame | 1544 | NA | 0.36569 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | TAF8|COL5A3 | TAF8 | COL5A3 | 6 | 19 | 1 | -1 | 4 | 3 | 2 | 1.5 | 42044977 | 10116907 | tier1 | 3UTR-CDS | 17350 | non-validated | 0 |
| BLCA | TCGA-UY-A78N-01A | TCGA-UY-A78N | MYCBP2|CPB2 | MYCBP2 | CPB2 | 13 | 13 | -1 | -1 | 17 | 23 | 18 | 0.075 | 77862296 | 46638876 | tier1 | In-frame | 10879 | NA | 0.37045 |
| BRCA | TCGA-E2-A1LG-01A | TCGA-E2-A1LG | WWP1|CPB2 | WWP1 | CPB2 | 8 | 13 | 1 | -1 | 26 | 59 | 54 | 3.5 | 87474075 | 46661955 | tier1 | In-frame | 19931 | non-validated | 0 |
| BRCA | TCGA-B6-A0RS-01A | TCGA-B6-A0RS | CDKAL1|HSP90AA1 | CDKAL1 | HSP90AA1 | 6 | 14 | 1 | -1 | 2 | 1 | 1 | 0.034 | 20535625 | 102568422 | tier2 | 5UTR-CDS | 3451 | NA | 0.3735 |
| PRAD | TCGA-YL-A8HM-01A | TCGA-YL-A8HM | PHC2|HSP90AA1 | PHC2 | HSP90AA1 | 1 | 14 | -1 | -1 | 3 | 6 | 5 | 0.14 | 33794471 | 102568422 | tier1 | Out-of-frame | 12685 | NA | 0.37706 |
| UCEC | TCGA-D1-A3DG-01A | TCGA-D1-A3DG | MYH9|HSP90AA1 | MYH9 | HSP90AA1 | 22 | 14 | -1 | -1 | 28 | 45 | 36 | 0.077 | 36783852 | 102550901 | tier1 | 5UTR-CDS | 10907 | NA | 0.38463 |
| HNSC | TCGA-HD-7753-01A | TCGA-HD-7753 | FILIP1L|IMPG2 | FILIP1L | IMPG2 | 3 | 3 | -1 | -1 | 6 | 30 | 27 | 0.051 | 99594916 | 100988417 | tier1 | 5UTR-CDS | 6542 | validated | 0.33882 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | TROVE2|CACNA1S | TROVE2 | CACNA1S | 1 | 1 | 1 | -1 | 35 | 41 | 37 | 2.4 | 193028906 | 201039532 | tier1 | 5UTR-CDS | 18716 | NA | 0 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | ARHGAP42|PGR | ARHGAP42 | PGR | 11 | 11 | 1 | -1 | 2 | 9 | 9 | 0.19 | 100558563 | 100933483 | tier2 | In-frame | 1255 | NA | 0.37602 |
| BRCA | TCGA-AO-A0J5-01A | TCGA-AO-A0J5 | FAM49B|KAT6A | FAM49B | KAT6A | 8 | 8 | -1 | -1 | 25 | 15 | 14 | 0.73 | 130883621 | 41792385 | tier1 | Out-of-frame | 6181 | NA | 0.33435 |
| BRCA | TCGA-D8-A27G-01A | TCGA-D8-A27G | TOM1L2|ULK2 | TOM1L2 | ULK2 | 17 | 17 | -1 | -1 | 3 | 5 | 3 | 0.041 | 17782941 | 19769141 | tier1 | In-frame | 18433 | NA | 0 |
| HNSC | TCGA-UF-A7JK-01A | TCGA-UF-A7JK | MAP4|ULK2 | MAP4 | ULK2 | 3 | 17 | -1 | -1 | 9 | 5 | 5 | 0.044 | 47956307 | 19681029 | tier1 | Out-of-frame | 9903 | NA | 0.37478 |
| LUSC | TCGA-33-6737-01A | TCGA-33-6737 | APOL2|ULK2 | APOL2 | ULK2 | 22 | 17 | -1 | -1 | 24 | 8 | 7 | 0.55 | 36627386 | 19729499 | tier1 | Out-of-frame | 1146 | NA | 0.37323 |
| GBM | TCGA-27-1835-01A | TCGA-27-1835 | CLIC4|PLOD1 | CLIC4 | PLOD1 | 1 | 1 | 1 | 1 | 3 | 2 | 1 | 1.6 | 25140710 | 12008033 | tier2 | Out-of-frame | 3791 | NA | 0.36309 |
| OV | TCGA-23-1118-01A | TCGA-23-1118 | MFN2|PLOD1 | MFN2 | PLOD1 | 1 | 1 | 1 | 1 | 3 | 4 | 4 | 0.47 | 12042647 | 12034710 | tier1 | NA | 10288 | validated | 0.34703 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | PITPNM3|P2RX5 | PITPNM3 | P2RX5 | 17 | 17 | -1 | -1 | 16 | 5 | 4 | 0.59 | 6371545 | 3595088 | tier1 | Out-of-frame | 12900 | NA | 0.36117 |
| BRCA | TCGA-AN-A0FY-01A | TCGA-AN-A0FY | DIAPH3|TDRD3 | DIAPH3 | TDRD3 | 13 | 13 | -1 | 1 | 162 | 122 | 115 | 0.042 | 60667762 | 61141659 | tier1 | In-frame | 4822 | NA | 0.35776 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | UHRF1BP1|EPYC | UHRF1BP1 | EPYC | 6 | 12 | 1 | -1 | 2 | 5 | 4 | 0.043 | 34791125 | 91358103 | tier2 | Out-of-frame | 19205 | NA | 0 |
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