Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A08X-01A | TCGA-A8-A08X | TBL1XR1|LXN | TBL1XR1 | LXN | 3 | 3 | -1 | -1 | 9 | 12 | 12 | 1.1 | 176750759 | 158388808 | tier1 | In-frame | 17548 | NA | 0 |
| BRCA | TCGA-A8-A084-01A | TCGA-A8-A084 | DGKD|SP140 | DGKD | SP140 | 2 | 2 | 1 | 1 | 8 | 10 | 10 | 2.5 | 234263320 | 231101798 | tier1 | Out-of-frame | 4755 | NA | 0.37003 |
| BRCA | TCGA-E9-A3QA-01A | TCGA-E9-A3QA | TXLNB|CDC14A | TXLNB | CDC14A | 6 | 1 | -1 | 1 | 3 | 6 | 6 | 0.2 | 139597967 | 100949848 | tier1 | Out-of-frame | 18975 | NA | 0 |
| SARC | TCGA-DX-A8BN-01A | TCGA-DX-A8BN | CEP89|CEACAM1 | CEP89 | CEACAM1 | 19 | 19 | -1 | -1 | 10 | 2 | 1 | 0.097 | 33406243 | 43016631 | tier2 | Out-of-frame | 3567 | NA | 0.37674 |
| STAD | TCGA-BR-4367-01A | TCGA-BR-4367 | SPATS2|SENP1 | SPATS2 | SENP1 | 12 | 12 | 1 | -1 | 9 | 8 | 7 | 0.048 | 49765073 | 48465504 | tier1 | 5UTR-CDS | 16684 | NA | 0 |
| PRAD | TCGA-CH-5761-01A | TCGA-CH-5761 | ARHGEF3|FDFT1 | ARHGEF3 | FDFT1 | 3 | 8 | -1 | 1 | 2 | 2 | 1 | 1.1 | 56761449 | 11653082 | tier3 | 3UTR-5UTR | 1325 | NA | 0.3647 |
| PRAD | TCGA-M7-A723-01A | TCGA-M7-A723 | C11orf75|FDFT1 | C11orf75 | FDFT1 | 11 | 8 | -1 | 1 | 2 | 3 | 3 | 0.3 | 93211638 | 11653082 | tier3 | 3UTR-5UTR | 2397 | NA | 0 |
| GBM | TCGA-19-1787-01B | TCGA-19-1787 | AC022415.5|KEAP1 | AC022415.5 | KEAP1 | 19 | 19 | -1 | -1 | 3 | 8 | 7 | 0.54 | 12267371 | 10610756 | tier1 | CDS-5UTR | 184 | NA | 0.36329 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | LGALS13|PTPRH | LGALS13 | PTPRH | 19 | 19 | 1 | -1 | 8 | 2 | 2 | 0.29 | 40096028 | 55699536 | tier1 | Out-of-frame | 9305 | NA | 0.36971 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | ZNF345|PTPRH | ZNF345 | PTPRH | 19 | 19 | 1 | -1 | 5 | 2 | 2 | 1.7 | 37342806 | 55699536 | tier1 | 5UTR-CDS | 20471 | NA | 0 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | ARL13B|EPHA6 | ARL13B | EPHA6 | 3 | 3 | 1 | 1 | 9 | 9 | 9 | 1.9 | 93722752 | 96728848 | tier1 | Out-of-frame | 1394 | NA | 0.36831 |
| LUAD | TCGA-78-7162-01A | TCGA-78-7162 | ZBTB20|EPHA6 | ZBTB20 | EPHA6 | 3 | 3 | -1 | 1 | 5 | 4 | 4 | 0.53 | 114219199 | 97439105 | tier4 | 5UTR-CDS | 20084 | NA | 0 |
| PRAD | TCGA-KK-A59X-01A | TCGA-KK-A59X | PCYT1A|EPHA6 | PCYT1A | EPHA6 | 3 | 3 | -1 | 1 | 3 | 3 | 1 | 2.8 | 196014403 | 97123994 | tier2 | NA | 12445 | NA | 0.36738 |
| PRAD | TCGA-EJ-5505-01A | TCGA-EJ-5505 | TMEM39A|EPHA6 | TMEM39A | EPHA6 | 3 | 3 | -1 | 1 | 12 | 24 | 23 | 0.62 | 119171294 | 96706174 | tier1 | In-frame | 18023 | NA | 0 |
| LUSC | TCGA-85-8070-01A | TCGA-85-8070 | DAPP1|SLC4A4 | DAPP1 | SLC4A4 | 4 | 4 | 1 | 1 | 20 | 10 | 10 | 0.005 | 100774505 | 72399944 | tier1 | In-frame | 4555 | NA | 0.37287 |
| PRAD | TCGA-HC-7819-01A | TCGA-HC-7819 | ZNF844|SLC4A4 | ZNF844 | SLC4A4 | 19 | 4 | 1 | 1 | 3 | 2 | 2 | 1.8 | 12175691 | 72316905 | tier1 | Out-of-frame | 20687 | NA | 0 |
| BLCA | TCGA-DK-A3IQ-01A | TCGA-DK-A3IQ | ZBTB5|SMARCA2 | ZBTB5 | SMARCA2 | 9 | 9 | -1 | 1 | 2 | 2 | 2 | 0.28 | 37465212 | 2086829 | tier2 | 5UTR-CDS | 20118 | NA | 0 |
| BRCA | TCGA-AN-A049-01A | TCGA-AN-A049 | RFX3|SMARCA2 | RFX3 | SMARCA2 | 9 | 9 | -1 | 1 | 2 | 1 | 1 | 0.013 | 3525747 | 2070418 | tier3 | 5UTR-CDS | 14616 | NA | 0 |
| KIRC | TCGA-B0-5084-01A | TCGA-B0-5084 | ELOF1|RDH8 | ELOF1 | RDH8 | 19 | 19 | -1 | 1 | 6 | 142 | 126 | 0.018 | 11670006 | 10127733 | tier1 | 5UTR-CDS | 5531 | NA | 0.35433 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | CELF5|RDH8 | CELF5 | RDH8 | 19 | 19 | 1 | 1 | 3 | 8 | 8 | 1.1 | 3225616 | 10127733 | tier1 | 5UTR-CDS | 3504 | non-validated | 0.34068 |
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