Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-B5-A5OD-01A | TCGA-B5-A5OD | HOXB3|FAP | HOXB3 | FAP | 17 | 2 | -1 | -1 | 4 | 6 | 6 | 0.42 | 46651199 | 163044873 | tier1 | 5UTR-CDS | 7937 | NA | 0.36085 |
| KIRC | TCGA-CJ-6030-01A | TCGA-CJ-6030 | TEAD4|TULP3 | TEAD4 | TULP3 | 12 | 12 | 1 | 1 | 4 | 5 | 5 | 2.2 | 3121398 | 3018695 | tier1 | 5UTR-CDS | 17644 | NA | 0 |
| BRCA | TCGA-C8-A12K-01A | TCGA-C8-A12K | TULP4|SYNJ2 | TULP4 | SYNJ2 | 6 | 6 | 1 | 1 | 12 | 5 | 5 | 0.84 | 158735300 | 158489679 | tier1 | Out-of-frame | 18965 | NA | 0 |
| LUSC | TCGA-66-2788-01A | TCGA-66-2788 | ATG5|SYNJ2 | ATG5 | SYNJ2 | 6 | 6 | -1 | 1 | 24 | 8 | 8 | 3 | 106763976 | 158502141 | tier1 | Out-of-frame | 1637 | NA | 0.36858 |
| UCEC | TCGA-AX-A3GI-01A | TCGA-AX-A3GI | TULP4|SYNJ2 | TULP4 | SYNJ2 | 6 | 6 | 1 | 1 | 14 | 8 | 7 | 0.84 | 158735300 | 158454487 | tier2 | Out-of-frame | 18964 | NA | 0 |
| BLCA | TCGA-S5-A6DX-01A | TCGA-S5-A6DX | ASAP1|ADCY2 | ASAP1 | ADCY2 | 8 | 5 | -1 | 1 | 2 | 2 | 1 | 0.41 | 131226802 | 7784478 | tier3 | Out-of-frame | 1476 | NA | 0.37614 |
| PCPG | TCGA-W2-A7HC-01A | TCGA-W2-A7HC | SOCS5|ADCY2 | SOCS5 | ADCY2 | 2 | 5 | 1 | 1 | 12 | 13 | 8 | 0.092 | 46926588 | 7520851 | tier1 | 5UTR-CDS | 16573 | NA | 0 |
| LAML | TCGA-AB-2849-03A | TCGA-AB-2849 | PICALM|MLLT10 | PICALM | MLLT10 | 11 | 10 | -1 | 1 | 15 | 19 | 11 | 0.66 | 85685751 | 21940602 | tier1 | In-frame | 12800 | NA | 0.36396 |
| LAML | TCGA-AB-2855-03A | TCGA-AB-2855 | PICALM|MLLT10 | PICALM | MLLT10 | 11 | 10 | -1 | 1 | 33 | 13 | 13 | 0.66 | 85685751 | 21940602 | tier1 | In-frame | 12801 | NA | 0.36396 |
| BRCA | TCGA-BH-A0AU-01A | TCGA-BH-A0AU | ALG14|NRD1 | ALG14 | NRD1 | 1 | 1 | -1 | -1 | 14 | 6 | 5 | 0.041 | 95530422 | 52276076 | tier1 | In-frame | 834 | NA | 0.35484 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | FBXL7|NRD1 | FBXL7 | NRD1 | 5 | 1 | 1 | -1 | 220 | 110 | 92 | 0.18 | 15616181 | 52299842 | tier1 | In-frame | 6335 | validated | 0.35652 |
| LUSC | TCGA-O2-A52N-01A | TCGA-O2-A52N | KIAA1310|BPIFB2 | KIAA1310 | BPIFB2 | 2 | 20 | -1 | 1 | 3 | 2 | 2 | 1.2 | 97267853 | 31604848 | tier1 | Out-of-frame | 8853 | NA | 0.33367 |
| DLBC | TCGA-FA-A4XK-01A | TCGA-FA-A4XK | TBL1XR1|TP73 | TBL1XR1 | TP73 | 3 | 1 | -1 | 1 | 11 | 22 | 21 | 0.42 | 176771561 | 3624113 | tier1 | In-frame | 17559 | NA | 0 |
| BRCA | TCGA-E9-A1R6-01A | TCGA-E9-A1R6 | MYO5B|CLUL1 | MYO5B | CLUL1 | 18 | 18 | -1 | 1 | 6 | 5 | 2 | 0.21 | 47721137 | 606978 | tier1 | CDS-5UTR | 10990 | NA | 0.36682 |
| LGG | TCGA-HT-8106-01A | TCGA-HT-8106 | COLEC12|CLUL1 | COLEC12 | CLUL1 | 18 | 18 | -1 | 1 | 6 | 9 | 7 | 3 | 357400 | 606978 | tier1 | CDS-5UTR | 4050 | NA | 0.34467 |
| HNSC | TCGA-CV-7235-01A | TCGA-CV-7235 | ZNF385B|FKBP7 | ZNF385B | FKBP7 | 2 | 2 | -1 | -1 | 19 | 6 | 6 | 0.33 | 180725828 | 179330658 | tier1 | 5UTR-CDS | 20480 | NA | 0 |
| LGG | TCGA-CS-5395-01A | TCGA-CS-5395 | SDC3|SLC1A3 | SDC3 | SLC1A3 | 1 | 5 | -1 | 1 | 3 | 2 | 1 | 0.27 | 31342314 | 36606541 | tier3 | NA | 15465 | non-validated | 0 |
| LUAD | TCGA-50-5946-01A | TCGA-50-5946 | NIPBL|SLC1A3 | NIPBL | SLC1A3 | 5 | 5 | 1 | 1 | 40 | 19 | 18 | 5.4 | 36877280 | 36671131 | tier1 | 5UTR-CDS | 11564 | NA | 0.35231 |
| SARC | TCGA-DX-A8BP-01A | TCGA-DX-A8BP | RPL8|SLC1A3 | RPL8 | SLC1A3 | 8 | 5 | -1 | 1 | 2 | 1 | 1 | 0.53 | 146015155 | 36606541 | tier3 | NA | 15007 | NA | 0 |
| SKCM | TCGA-EE-A2MJ-06A | TCGA-EE-A2MJ | NIPBL|SLC1A3 | NIPBL | SLC1A3 | 5 | 5 | 1 | 1 | 5 | 1 | 1 | 5.4 | 36877280 | 36608431 | tier2 | 5UTR-5UTR | 11565 | NA | 0.35231 |
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