Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | RABGAP1L|KLHL20 | RABGAP1L | KLHL20 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 0.83 | 174274265 | 173735285 | tier2 | Out-of-frame | 14149 | NA | 0 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | IFT81|ACACB | IFT81 | ACACB | 12 | 12 | 1 | 1 | 3 | 4 | 4 | 3.6 | 110647021 | 109625804 | tier1 | In-frame | 8081 | NA | 0.35778 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | ARHGEF18|ACACB | ARHGEF18 | ACACB | 19 | 12 | 1 | 1 | 478 | 306 | 284 | 0.16 | 7460133 | 109634813 | tier1 | 5UTR-CDS | 1306 | NA | 0.36191 |
| BLCA | TCGA-GU-A42Q-01A | TCGA-GU-A42Q | TECR|ICAM3 | TECR | ICAM3 | 19 | 19 | 1 | -1 | 22 | 9 | 8 | 0.26 | 14640523 | 10449624 | tier1 | Out-of-frame | 17649 | NA | 0 |
| HNSC | TCGA-QK-A6VC-01A | TCGA-QK-A6VC | RAVER1|ICAM3 | RAVER1 | ICAM3 | 19 | 19 | -1 | -1 | 8 | 6 | 5 | 0.019 | 10443965 | 10449624 | tier1 | Out-of-frame | 14397 | NA | 0 |
| BRCA | TCGA-AR-A24W-01A | TCGA-AR-A24W | FAM122B|GPC4 | FAM122B | GPC4 | X | X | -1 | -1 | 3 | 4 | 4 | 0.062 | 133915851 | 132458564 | tier1 | Out-of-frame | 6025 | NA | 0.35777 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | TBC1D5|TOP2B | TBC1D5 | TOP2B | 3 | 3 | -1 | -1 | 4 | 5 | 5 | 1.3 | 17783973 | 25642716 | tier1 | 5UTR-CDS | 17502 | NA | 0 |
| SKCM | TCGA-BF-A1Q0-01A | TCGA-BF-A1Q0 | NSMCE1|IL4R | NSMCE1 | IL4R | 16 | 16 | -1 | 1 | 25 | 13 | 12 | 1.6 | 27268756 | 27367129 | tier1 | In-frame | 11796 | NA | 0.37656 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | FBXL20|SIRT6 | FBXL20 | SIRT6 | 17 | 19 | -1 | -1 | 2 | 4 | 4 | 0.17 | 37557614 | 4175934 | tier2 | Out-of-frame | 6320 | non-validated | 0.35802 |
| BRCA | TCGA-BH-A1F0-01A | TCGA-BH-A1F0 | HPS3|PHF17 | HPS3 | PHF17 | 3 | 4 | 1 | 1 | 2 | 3 | 1 | 0.96 | 148847727 | 129752888 | tier4 | CDS-5UTR | 7954 | NA | 0.36123 |
| SARC | TCGA-3B-A9HV-01A | TCGA-3B-A9HV | TMEM35|SLC25A43 | TMEM35 | SLC25A43 | X | X | 1 | 1 | 4 | 4 | 4 | 0.22 | 100334111 | 118585972 | tier1 | In-frame | 18019 | NA | 0 |
| BRCA | TCGA-BH-A18U-01A | TCGA-BH-A18U | RHOT1|FGFR1 | RHOT1 | FGFR1 | 17 | 8 | 1 | -1 | 5 | 4 | 4 | 2.4 | 30469748 | 38315052 | tier2 | CDS-5UTR | 14660 | non-validated | 0 |
| LUSC | TCGA-22-5480-01A | TCGA-22-5480 | BAG4|FGFR1 | BAG4 | FGFR1 | 8 | 8 | 1 | -1 | 33 | 25 | 23 | 0.27 | 38050313 | 38283763 | tier2 | In-frame | 1902 | NA | 0.38443 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | HACE1|FBLN1 | HACE1 | FBLN1 | 6 | 22 | -1 | 1 | 5 | 1 | 1 | 0.48 | 105280917 | 45914562 | tier3 | Out-of-frame | 7580 | non-validated | 0.36961 |
| LUSC | TCGA-98-A538-01A | TCGA-98-A538 | MIRLET7BHG|FBLN1 | MIRLET7BHG | FBLN1 | 22 | 22 | 1 | 1 | 51 | 19 | 18 | 0.48 | 46494438 | 45996187 | tier4 | Out-of-frame | 10389 | NA | 0.36155 |
| LUSC | TCGA-85-A50M-01A | TCGA-85-A50M | TBC1D22A|FBLN1 | TBC1D22A | FBLN1 | 22 | 22 | 1 | 1 | 22 | 27 | 25 | 0.4 | 47193517 | 45946372 | tier1 | In-frame | 17466 | NA | 0 |
| OV | TCGA-13-0795-01A | TCGA-13-0795 | ATXN10|FBLN1 | ATXN10 | FBLN1 | 22 | 22 | 1 | 1 | 8 | 3 | 3 | 1.2 | 46088958 | 45996187 | tier1 | In-frame | 1809 | NA | 0.36415 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | ARFGAP3|FBLN1 | ARFGAP3 | FBLN1 | 22 | 22 | -1 | 1 | 87 | 39 | 38 | 1 | 43253120 | 45996187 | tier1 | Out-of-frame | 1187 | NA | 0.36601 |
| KIRC | TCGA-B0-4688-01A | TCGA-B0-4688 | FBXO18|ITGA8 | FBXO18 | ITGA8 | 10 | 10 | 1 | -1 | 85 | 75 | 70 | 0.89 | 5960441 | 15648421 | tier1 | Out-of-frame | 6342 | NA | 0.37067 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | FGF12|LAMP3 | FGF12 | LAMP3 | 3 | 3 | -1 | -1 | 8 | 2 | 2 | 0.11 | 192444970 | 182872179 | tier1 | In-frame | 6444 | NA | 0.35389 |
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