Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-FG-5963-02A | TCGA-FG-5963 | UBE2E2|SEMA3A | UBE2E2 | SEMA3A | 3 | 7 | 1 | -1 | 8 | 9 | 9 | 0.55 | 23258803 | 83643667 | tier1 | Out-of-frame | 19065 | NA | 0 |
| SARC | TCGA-DX-A1L1-01A | TCGA-DX-A1L1 | AUTS2|SEMA3A | AUTS2 | SEMA3A | 7 | 7 | 1 | -1 | 8 | 1 | 1 | 1.2 | 70163606 | 83689874 | tier2 | Out-of-frame | 1826 | NA | 0.36075 |
| SARC | TCGA-MB-A8JK-01A | TCGA-MB-A8JK | NFIX|SEMA3A | NFIX | SEMA3A | 19 | 7 | 1 | -1 | 3 | 7 | 7 | 4 | 13136366 | 83614793 | tier1 | Out-of-frame | 11505 | NA | 0.37387 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | RP11-73M18.2|MARK3 | RP11-73M18.2 | MARK3 | 14 | 14 | 1 | 1 | 11 | 7 | 5 | 0.027 | 104136620 | 103915256 | tier1 | In-frame | 14946 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | RP11-73M18.2|MARK3 | RP11-73M18.2 | MARK3 | 14 | 14 | 1 | 1 | 73 | 18 | 13 | 0.027 | 104053701 | 103969219 | tier1 | In-frame | 14944 | non-validated | 0 |
| LUSC | TCGA-77-A5G6-01A | TCGA-77-A5G6 | RAD51B|MARK3 | RAD51B | MARK3 | 14 | 14 | 1 | 1 | 11 | 10 | 9 | 0.34 | 68353921 | 103946724 | tier1 | In-frame | 14172 | NA | 0 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | KLC1|MARK3 | KLC1 | MARK3 | 14 | 14 | 1 | 1 | 16 | 24 | 23 | 0.033 | 104095831 | 103969219 | tier1 | 5UTR-CDS | 9035 | non-validated | 0.38277 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | RP11-73M18.2|MARK3 | RP11-73M18.2 | MARK3 | 14 | 14 | 1 | 1 | 2 | 1 | 1 | 0.027 | 104124113 | 103969219 | tier2 | Out-of-frame | 14945 | NA | 0 |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | IQCB1|CACNG4 | IQCB1 | CACNG4 | 3 | 17 | -1 | 1 | 127 | 58 | 58 | 3.8 | 121553238 | 65014305 | tier1 | 5UTR-CDS | 8308 | non-validated | 0.34984 |
| LUAD | TCGA-78-7146-01A | TCGA-78-7146 | HELZ|CACNG4 | HELZ | CACNG4 | 17 | 17 | -1 | 1 | 50 | 28 | 24 | 0.011 | 65116521 | 65026582 | tier1 | In-frame | 7693 | validated | 0.35632 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | OSBPL2|PLD1 | OSBPL2 | PLD1 | 20 | 3 | 1 | -1 | 9 | 6 | 6 | 0.019 | 60838747 | 171338310 | tier1 | Out-of-frame | 12076 | NA | 0.37249 |
| BRCA | TCGA-EW-A1P4-01A | TCGA-EW-A1P4 | TFDP2|PLD1 | TFDP2 | PLD1 | 3 | 3 | -1 | -1 | 5 | 13 | 12 | 2.1 | 141747421 | 171455872 | tier1 | 5UTR-5UTR | 17705 | NA | 0 |
| LUSC | TCGA-46-6026-01A | TCGA-46-6026 | MGAT4C|PLD1 | MGAT4C | PLD1 | 12 | 3 | -1 | -1 | 2 | 1 | 1 | 0.19 | 86443452 | 171455872 | tier2 | 5UTR-5UTR | 10315 | NA | 0.36854 |
| UCEC | TCGA-AJ-A6NU-01A | TCGA-AJ-A6NU | TIMELESS|BAZ2A | TIMELESS | BAZ2A | 12 | 12 | -1 | -1 | 14 | 5 | 5 | 0.032 | 56843094 | 56997484 | tier1 | 5UTR-CDS | 17826 | NA | 0 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | GOLGA4|MLH1 | GOLGA4 | MLH1 | 3 | 3 | 1 | 1 | 8 | 15 | 12 | 0.063 | 37370584 | 37089010 | tier1 | In-frame | 7264 | non-validated | 0.36293 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | GOLGA4|MLH1 | GOLGA4 | MLH1 | 3 | 3 | 1 | 1 | 14 | 12 | 11 | 0.063 | 37343823 | 37058997 | tier1 | In-frame | 7266 | NA | 0.36293 |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | MYRIP|MLH1 | MYRIP | MLH1 | 3 | 3 | 1 | 1 | 45 | 46 | 39 | 0.14 | 39942417 | 37089010 | tier1 | Out-of-frame | 11020 | NA | 0.36137 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | GOLGA4|MLH1 | GOLGA4 | MLH1 | 3 | 3 | 1 | 1 | 3 | 65 | 56 | 0.063 | 37360685 | 37061801 | tier4 | Out-of-frame | 7265 | NA | 0.36293 |
| HNSC | TCGA-CN-5361-01A | TCGA-CN-5361 | RABGAP1L|KLHL20 | RABGAP1L | KLHL20 | 1 | 1 | 1 | 1 | 12 | 2 | 2 | 0.83 | 174128795 | 173702852 | tier1 | 5UTR-CDS | 14148 | NA | 0 |
| LIHC | TCGA-CC-A3MB-01A | TCGA-CC-A3MB | CENPL|KLHL20 | CENPL | KLHL20 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 1 | 173776405 | 173720903 | tier2 | In-frame | 3522 | NA | 0.35976 |
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