Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | FRMD8|MARK2 | FRMD8 | MARK2 | 11 | 11 | 1 | 1 | 2 | 47 | 38 | 0.63 | 65154592 | 63662631 | tier2 | Out-of-frame | 6735 | NA | 0.38458 |
| BRCA | TCGA-A8-A08F-01A | TCGA-A8-A08F | LIN7A|TRHDE | LIN7A | TRHDE | 12 | 12 | -1 | 1 | 2 | 5 | 5 | 0.35 | 81331420 | 72680461 | tier4 | Out-of-frame | 9361 | NA | 0.37113 |
| BRCA | TCGA-AC-A7VB-01A | TCGA-AC-A7VB | ZNF257|TRHDE | ZNF257 | TRHDE | 19 | 12 | 1 | 1 | 4 | 3 | 3 | 0.058 | 22235437 | 72863538 | tier4 | Out-of-frame | 20423 | NA | 0 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | AGAP1|TRHDE | AGAP1 | TRHDE | 2 | 12 | 1 | 1 | 3 | 4 | 4 | 0.35 | 236403493 | 72936071 | tier1 | Out-of-frame | 621 | NA | 0.36882 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | GNPTAB|TRHDE | GNPTAB | TRHDE | 12 | 12 | -1 | 1 | 33 | 24 | 21 | 0.33 | 102224337 | 72680461 | tier1 | Out-of-frame | 7253 | validated | 0.35341 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | PLXNA4|TRHDE | PLXNA4 | TRHDE | 7 | 12 | -1 | 1 | 5 | 2 | 2 | 0.79 | 132261181 | 72680461 | tier1 | 5UTR-CDS | 13068 | NA | 0.35828 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | PPFIA2|TRHDE | PPFIA2 | TRHDE | 12 | 12 | -1 | 1 | 26 | 19 | 16 | 0.007 | 82147752 | 72771775 | tier1 | In-frame | 13276 | NA | 0.36432 |
| SARC | TCGA-DX-AB2S-01A | TCGA-DX-AB2S | TMCC3|TRHDE | TMCC3 | TRHDE | 12 | 12 | -1 | 1 | 5 | 1 | 1 | 1.2 | 95044129 | 72680461 | tier2 | Out-of-frame | 17902 | NA | 0 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | UHRF1BP1L|TRHDE | UHRF1BP1L | TRHDE | 12 | 12 | -1 | 1 | 38 | 37 | 36 | 0.3 | 100536370 | 72680461 | tier1 | In-frame | 19213 | NA | 0 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | AVIL|TRHDE | AVIL | TRHDE | 12 | 12 | -1 | 1 | 49 | 32 | 32 | 2.1 | 58201977 | 72680461 | tier1 | Out-of-frame | 1829 | NA | 0.36012 |
| BRCA | TCGA-B6-A0IE-01A | TCGA-B6-A0IE | SIL1|STK10 | SIL1 | STK10 | 5 | 5 | -1 | -1 | 4 | 1 | 1 | 0.003 | 138456724 | 171583792 | tier3 | Out-of-frame | 15927 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | RASSF3|STK10 | RASSF3 | STK10 | 12 | 5 | 1 | -1 | 233 | 208 | 196 | 0.22 | 65004523 | 171491816 | tier1 | In-frame | 14383 | validated | 0 |
| LGG | TCGA-TM-A7C3-01A | TCGA-TM-A7C3 | GPBP1L1|PVR | GPBP1L1 | PVR | 1 | 19 | -1 | 1 | 17 | 7 | 5 | 2.7 | 46124700 | 45153081 | tier1 | Out-of-frame | 7320 | NA | 0.36762 |
| LUSC | TCGA-56-A4BX-01A | TCGA-56-A4BX | CBLC|PVR | CBLC | PVR | 19 | 19 | 1 | 1 | 6 | 2 | 2 | 0.092 | 45303707 | 45164559 | tier1 | 3UTR-CDS | 3079 | NA | 0.38105 |
| PRAD | TCGA-EJ-5512-01A | TCGA-EJ-5512 | RPL8|SCARB1 | RPL8 | SCARB1 | 8 | 12 | -1 | -1 | 2 | 1 | 1 | 0.4 | 146015154 | 125324217 | tier3 | 3UTR-5UTR | 15006 | NA | 0 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | LPP|TP63 | LPP | TP63 | 3 | 3 | 1 | 1 | 14 | 19 | 17 | 0.26 | 188059507 | 189526061 | tier1 | 5UTR-CDS | 9468 | NA | 0.37541 |
| LGG | TCGA-CS-4942-01A | TCGA-CS-4942 | LEPREL1|TP63 | LEPREL1 | TP63 | 3 | 3 | -1 | 1 | 3 | 2 | 2 | 0.18 | 189838041 | 189526061 | tier1 | In-frame | 9298 | NA | 0.36789 |
| SKCM | TCGA-GF-A769-01A | TCGA-GF-A769 | ZMAT3|TP63 | ZMAT3 | TP63 | 3 | 3 | -1 | 1 | 16 | 13 | 13 | 1.6 | 178785271 | 189455529 | tier1 | Out-of-frame | 20313 | NA | 0 |
| LGG | TCGA-HT-8104-01A | TCGA-HT-8104 | ANK2|ALPK1 | ANK2 | ALPK1 | 4 | 4 | 1 | 1 | 6 | 16 | 14 | 0.79 | 113825670 | 113350305 | tier1 | In-frame | 899 | validated | 0.37169 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | ANK2|ALPK1 | ANK2 | ALPK1 | 4 | 4 | 1 | 1 | 3 | 3 | 2 | 0.79 | 113825670 | 113359640 | tier1 | Out-of-frame | 898 | NA | 0.37169 |
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