Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | SEPT9|JMJD6 | SEPT9 | JMJD6 | 17 | 17 | 1 | -1 | 74 | 133 | 130 | 0.069 | 75277636 | 74721937 | tier1 | 5UTR-CDS | 15608 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | ST6GALNAC2|JMJD6 | ST6GALNAC2 | JMJD6 | 17 | 17 | -1 | -1 | 39 | 28 | 28 | 0.033 | 74574838 | 74716580 | tier1 | Out-of-frame | 16952 | NA | 0 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | KIFC3|CNGB1 | KIFC3 | CNGB1 | 16 | 16 | -1 | -1 | 9 | 5 | 3 | 1.7 | 57828911 | 57921978 | tier1 | Out-of-frame | 9022 | NA | 0.35887 |
| UCEC | TCGA-EY-A54A-01A | TCGA-EY-A54A | PLLP|CNGB1 | PLLP | CNGB1 | 16 | 16 | -1 | -1 | 2 | 4 | 4 | 0.75 | 57318318 | 57946898 | tier2 | In-frame | 13040 | NA | 0.35619 |
| ESCA | TCGA-JY-A6F8-01A | TCGA-JY-A6F8 | FAF1|TESK2 | FAF1 | TESK2 | 1 | 1 | -1 | -1 | 2 | 41 | 36 | 0.48 | 51121114 | 45821121 | tier2 | In-frame | 5984 | NA | 0.37552 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | KIAA1429|CAMK2A | KIAA1429 | CAMK2A | 8 | 5 | -1 | -1 | 3 | 2 | 1 | 0.36 | 95541298 | 149602276 | tier3 | Out-of-frame | 8863 | non-validated | 0.38125 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | C12orf26|ATP2B1 | C12orf26 | ATP2B1 | 12 | 12 | 1 | -1 | 346 | 199 | 179 | 0.52 | 82793173 | 90005149 | tier1 | In-frame | 2406 | NA | 0 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | CBWD2|MAP4K4 | CBWD2 | MAP4K4 | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.007 | 114212355 | 102481392 | tier4 | In-frame | 3083 | NA | 0.38177 |
| UCEC | TCGA-A5-A2K2-01A | TCGA-A5-A2K2 | ATL2|MAP4K4 | ATL2 | MAP4K4 | 2 | 2 | -1 | 1 | 3 | 1 | 1 | 1.6 | 38604285 | 102483674 | tier3 | In-frame | 1649 | NA | 0.37924 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | INPP4A|MGAT4A | INPP4A | MGAT4A | 2 | 2 | 1 | -1 | 55 | 46 | 7 | 0.58 | 99149958 | 99242298 | tier1 | Out-of-frame | 8239 | NA | 0.36795 |
| BRCA | TCGA-A8-A0A9-01A | TCGA-A8-A0A9 | PPM1H|SLC6A15 | PPM1H | SLC6A15 | 12 | 12 | -1 | -1 | 44 | 76 | 67 | 0.24 | 63131282 | 85264449 | tier1 | In-frame | 13325 | NA | 0.34582 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | TMTC3|SLC6A15 | TMTC3 | SLC6A15 | 12 | 12 | 1 | -1 | 6 | 1 | 1 | 0.088 | 88536264 | 85286087 | tier2 | 5UTR-5UTR | 18316 | non-validated | 0 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | MPP5|RDH11 | MPP5 | RDH11 | 14 | 14 | 1 | -1 | 13 | 9 | 9 | 0.15 | 67708250 | 68151921 | tier1 | 5UTR-CDS | 10621 | non-validated | 0.36786 |
| BRCA | TCGA-AN-A0XT-01A | TCGA-AN-A0XT | C19orf20|PRKACA | C19orf20 | PRKACA | 19 | 19 | 1 | -1 | 5 | 7 | 7 | 1.3 | 507844 | 14204049 | tier1 | Out-of-frame | 2565 | NA | 0 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | GATAD2A|PRKACA | GATAD2A | PRKACA | 19 | 19 | 1 | -1 | 14 | 19 | 19 | 0.16 | 19547028 | 14204604 | tier1 | Out-of-frame | 6975 | NA | 0.37961 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | GRINL1A|LPHN1 | GRINL1A | LPHN1 | 15 | 19 | 1 | -1 | 8 | 5 | 4 | 1.2 | 57896553 | 14263249 | tier1 | 5UTR-CDS | 7457 | NA | 0.36796 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | ZNF507|LPHN1 | ZNF507 | LPHN1 | 19 | 19 | 1 | -1 | 2 | 5 | 4 | 7.5 | 32851524 | 14294509 | tier2 | CDS-5UTR | 20532 | NA | 0 |
| LUAD | TCGA-86-8358-01A | TCGA-86-8358 | SYNE2|ACTN1 | SYNE2 | ACTN1 | 14 | 14 | 1 | -1 | 12 | 9 | 8 | 0.069 | 64319861 | 69378959 | tier1 | 5UTR-CDS | 17242 | NA | 0 |
| SARC | TCGA-DX-AB2V-01A | TCGA-DX-AB2V | MAX|ACTN1 | MAX | ACTN1 | 14 | 14 | -1 | -1 | 310 | 106 | 102 | 1.5 | 65560426 | 69392389 | tier1 | In-frame | 10038 | NA | 0.38123 |
| BRCA | TCGA-A2-A1G4-01A | TCGA-A2-A1G4 | PPFIA1|MARK2 | PPFIA1 | MARK2 | 11 | 11 | 1 | 1 | 30 | 17 | 16 | 0.25 | 70118542 | 63662631 | tier1 | In-frame | 13255 | NA | 0.38619 |
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