Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | MCF2L|ATP11A | MCF2L | ATP11A | 13 | 13 | 1 | 1 | 2 | 2 | 2 | 0.17 | 113556685 | 113478658 | tier3 | In-frame | 10086 | NA | 0.37391 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | PLD3|SIRT2 | PLD3 | SIRT2 | 19 | 19 | 1 | -1 | 9 | 14 | 10 | 0.046 | 40854675 | 39384507 | tier1 | 5UTR-CDS | 12982 | NA | 0.363 |
| KIRC | TCGA-B0-5116-01A | TCGA-B0-5116 | HNRNPL|SIRT2 | HNRNPL | SIRT2 | 19 | 19 | -1 | -1 | 11 | 17 | 16 | 0.15 | 39337956 | 39372131 | tier1 | Out-of-frame | 7901 | NA | 0.3747 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | PLXNB2|MAST4 | PLXNB2 | MAST4 | 22 | 5 | -1 | 1 | 20 | 20 | 20 | 0.2 | 50722031 | 66195779 | tier1 | Out-of-frame | 13072 | NA | 0.37334 |
| BRCA | TCGA-E2-A1IH-01A | TCGA-E2-A1IH | ANK1|ADAM7 | ANK1 | ADAM7 | 8 | 8 | -1 | 1 | 19 | 20 | 20 | 0.024 | 41591489 | 24384268 | tier1 | In-frame | 896 | NA | 0.37551 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | FGD4|ABCC9 | FGD4 | ABCC9 | 12 | 12 | 1 | -1 | 11 | 16 | 16 | 0.005 | 32717223 | 22040868 | tier1 | 5UTR-CDS | 6428 | non-validated | 0.37158 |
| BLCA | TCGA-XF-AAMZ-01A | TCGA-XF-AAMZ | YWHAZ|GAL | YWHAZ | GAL | 8 | 11 | -1 | 1 | 183 | 182 | 170 | 0.008 | 101964157 | 68452392 | tier1 | 5UTR-CDS | 20060 | NA | 0 |
| BRCA | TCGA-A8-A06N-01A | TCGA-A8-A06N | OSBP|GAL | OSBP | GAL | 11 | 11 | -1 | 1 | 4 | 5 | 5 | 1.8 | 59375957 | 68458385 | tier1 | Out-of-frame | 12061 | NA | 0.35509 |
| SKCM | TCGA-EE-A29L-06A | TCGA-EE-A29L | EFHA2|TGFBR3 | EFHA2 | TGFBR3 | 8 | 1 | 1 | -1 | 29 | 10 | 8 | 0.075 | 16885169 | 92200516 | tier1 | In-frame | 5343 | NA | 0.37153 |
| LGG | TCGA-S9-A6TS-01A | TCGA-S9-A6TS | PARN|PLA2G10 | PARN | PLA2G10 | 16 | 16 | -1 | -1 | 4 | 2 | 2 | 100 | 14645878 | 14766606 | tier1 | In-frame | 12295 | NA | 0.3536 |
| SARC | TCGA-DX-AB2Q-01A | TCGA-DX-AB2Q | SOX5|GUCY2C | SOX5 | GUCY2C | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 3.3 | 23818378 | 14766225 | tier3 | Out-of-frame | 16619 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | RNH1|SCT | RNH1 | SCT | 11 | 11 | -1 | -1 | 36 | 52 | 46 | 0.46 | 507113 | 626989 | tier1 | 5UTR-CDS | 14861 | NA | 0 |
| SARC | TCGA-WK-A8XO-01A | TCGA-WK-A8XO | RAB3IP|NUCB2 | RAB3IP | NUCB2 | 12 | 11 | 1 | 1 | 9 | 12 | 9 | 0.78 | 70132811 | 17304336 | tier1 | 5UTR-5UTR | 14102 | NA | 0 |
| THCA | TCGA-EM-A2OZ-01A | TCGA-EM-A2OZ | EIF4G2|NUCB2 | EIF4G2 | NUCB2 | 11 | 11 | -1 | 1 | 2 | 2 | 1 | 1.1 | 10818600 | 17297555 | tier3 | NA | 5468 | NA | 0.3656 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | EPB41L4B|PTPN3 | EPB41L4B | PTPN3 | 9 | 9 | -1 | -1 | 10 | 17 | 17 | 0.15 | 112030671 | 112172695 | tier1 | Out-of-frame | 5655 | validated | 0.3715 |
| PRAD | TCGA-KK-A8IJ-01A | TCGA-KK-A8IJ | RB1CC1|PTPN3 | RB1CC1 | PTPN3 | 8 | 9 | -1 | -1 | 41 | 21 | 21 | 0.17 | 53580581 | 112153841 | tier1 | In-frame | 14412 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | FBXL7|PTPN3 | FBXL7 | PTPN3 | 5 | 9 | 1 | -1 | 2 | 1 | 1 | 1.4 | 15616181 | 112190964 | tier2 | Out-of-frame | 6336 | NA | 0.37239 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | HEATR6|FGF10 | HEATR6 | FGF10 | 17 | 5 | -1 | -1 | 4 | 6 | 6 | 0.025 | 58132876 | 44310632 | tier1 | Out-of-frame | 7664 | NA | 0.36114 |
| LUSC | TCGA-22-4595-01A | TCGA-22-4595 | NIPBL|FGF10 | NIPBL | FGF10 | 5 | 5 | 1 | -1 | 66 | 25 | 24 | 0.23 | 36962376 | 44310632 | tier4 | In-frame | 11557 | NA | 0.35498 |
| BRCA | TCGA-B6-A0RG-01A | TCGA-B6-A0RG | MKL2|FSTL3 | MKL2 | FSTL3 | 16 | 19 | 1 | 1 | 10 | 2 | 1 | 0.22 | 14234617 | 681650 | tier2 | In-frame | 10415 | NA | 0.36651 |
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