Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 339 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | CATSPERB|ATXN3 | CATSPERB | ATXN3 | 14 | 14 | -1 | -1 | 7 | 4 | 4 | 3.1 | 92246920 | 92563182 | tier1 | NA | 3040 | NA | 0.36115 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | CATSPERB|ATXN3 | CATSPERB | ATXN3 | 14 | 14 | -1 | -1 | 14 | 13 | 13 | 3.1 | 92159470 | 92563182 | tier1 | In-frame | 3039 | NA | 0.36115 |
| CHOL | TCGA-W5-AA2W-01A | TCGA-W5-AA2W | BICC1|FGFR2 | BICC1 | FGFR2 | 10 | 10 | 1 | -1 | 46 | 21 | 20 | 0.91 | 60563002 | 123239535 | tier1 | In-frame | 2090 | NA | 0.38308 |
| LUSC | TCGA-66-2765-01A | TCGA-66-2765 | KIAA1967|FGFR2 | KIAA1967 | FGFR2 | 8 | 10 | 1 | -1 | 7 | 16 | 15 | 0.23 | 22462355 | 123239535 | tier1 | 5UTR-CDS | 8917 | NA | 0.38427 |
| STAD | TCGA-IP-7968-01A | TCGA-IP-7968 | RPL19|CACNB1 | RPL19 | CACNB1 | 17 | 17 | 1 | -1 | 57 | 388 | 343 | 0.087 | 37357572 | 37351223 | tier1 | Out-of-frame | 14990 | NA | 0 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | URM1|TP53BP1 | URM1 | TP53BP1 | 9 | 15 | 1 | -1 | 11 | 7 | 7 | 0.69 | 131140385 | 43762264 | tier1 | In-frame | 19295 | NA | 0 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | SKI|PRKCZ | SKI | PRKCZ | 1 | 1 | 1 | 1 | 3 | 6 | 5 | 0.46 | 2161174 | 2087434 | tier1 | In-frame | 15981 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | SKI|PRKCZ | SKI | PRKCZ | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.46 | 2161174 | 2066701 | tier3 | Out-of-frame | 15982 | non-validated | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | SKI|PRKCZ | SKI | PRKCZ | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.46 | 2161174 | 2066701 | tier3 | Out-of-frame | 15983 | NA | 0 |
| LIHC | TCGA-DD-A11D-01A | TCGA-DD-A11D | ARID1A|PRKCZ | ARID1A | PRKCZ | 1 | 1 | 1 | 1 | 18 | 14 | 14 | 0.058 | 27088810 | 2066701 | tier1 | In-frame | 1340 | NA | 0.39055 |
| LGG | TCGA-TQ-A8XE-01A | TCGA-TQ-A8XE | TRAPPC2|ATP2B3 | TRAPPC2 | ATP2B3 | X | X | -1 | 1 | 14 | 42 | 39 | 0.2 | 13737990 | 152845436 | tier1 | Out-of-frame | 18572 | non-validated | 0 |
| LUSC | TCGA-56-A49D-01A | TCGA-56-A49D | GNE|ROCK1 | GNE | ROCK1 | 9 | 18 | -1 | -1 | 5 | 5 | 5 | 0.36 | 36236829 | 18650574 | tier1 | Out-of-frame | 7227 | NA | 0.3882 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | TBL1XR1|ROCK1 | TBL1XR1 | ROCK1 | 3 | 18 | -1 | -1 | 5 | 16 | 13 | 0.16 | 176914909 | 18619524 | tier1 | 5UTR-CDS | 17556 | NA | 0 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | PANK1|PDK3 | PANK1 | PDK3 | 10 | X | -1 | 1 | 2 | 1 | 1 | 0.8 | 91404357 | 24523326 | tier2 | In-frame | 12239 | NA | 0.35149 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | RAB17|HDAC4 | RAB17 | HDAC4 | 2 | 2 | -1 | -1 | 3 | 8 | 5 | 0.18 | 238494641 | 239976529 | tier1 | Out-of-frame | 14050 | NA | 0 |
| SKCM | TCGA-D3-A3MO-06A | TCGA-D3-A3MO | PER2|HDAC4 | PER2 | HDAC4 | 2 | 2 | -1 | -1 | 2 | 2 | 1 | 0.048 | 239157703 | 240037006 | tier2 | In-frame | 12614 | non-validated | 0.3824 |
| PRAD | TCGA-HC-A48F-01A | TCGA-HC-A48F | DIP2C|INPP5A | DIP2C | INPP5A | 10 | 10 | -1 | 1 | 2 | 2 | 1 | 0.83 | 735434 | 134540325 | tier2 | Out-of-frame | 4842 | NA | 0.35395 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | ARHGEF7|ATP11A | ARHGEF7 | ATP11A | 13 | 13 | 1 | 1 | 2 | 2 | 2 | 1.7 | 111920017 | 113459271 | tier2 | Out-of-frame | 1331 | NA | 0.38091 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | TUBGCP3|ATP11A | TUBGCP3 | ATP11A | 13 | 13 | -1 | 1 | 11 | 17 | 14 | 0.35 | 113158346 | 113490492 | tier1 | Out-of-frame | 18944 | NA | 0 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | DCUN1D2|ATP11A | DCUN1D2 | ATP11A | 13 | 13 | -1 | 1 | 19 | 15 | 14 | 2.9 | 114134890 | 113439449 | tier1 | Out-of-frame | 4618 | NA | 0.34829 |
|
Showing page 339 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.