Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-DJ-A2Q4-01A | TCGA-DJ-A2Q4 | OS9|ERBB3 | OS9 | ERBB3 | 12 | 12 | 1 | 1 | 2 | 5 | 5 | 0.013 | 58115338 | 56492035 | tier3 | 3UTR-5UTR | 12058 | NA | 0.38305 |
| UCS | TCGA-N6-A4VC-01A | TCGA-N6-A4VC | TPT1|ERBB3 | TPT1 | ERBB3 | 13 | 12 | -1 | 1 | 2 | 59 | 29 | 2.8 | 45911313 | 56492035 | tier3 | 3UTR-5UTR | 18505 | NA | 0 |
| ESCA | TCGA-L5-A8NE-01A | TCGA-L5-A8NE | FA2H|KARS | FA2H | KARS | 16 | 16 | -1 | -1 | 5 | 59 | 53 | 2.3 | 74773921 | 75665753 | tier1 | In-frame | 5971 | validated | 0.35946 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | WDR59|KARS | WDR59 | KARS | 16 | 16 | -1 | -1 | 22 | 177 | 159 | 2.7 | 74982417 | 75670445 | tier1 | In-frame | 19792 | NA | 0 |
| LUSC | TCGA-56-8626-01A | TCGA-56-8626 | ADAT1|KARS | ADAT1 | KARS | 16 | 16 | -1 | -1 | 21 | 10 | 10 | 1.7 | 75654529 | 75678360 | tier1 | CDS-5UTR | 459 | NA | 0.35723 |
| PRAD | TCGA-HC-A6AP-01A | TCGA-HC-A6AP | CHCHD6|MYLK | CHCHD6 | MYLK | 3 | 3 | 1 | -1 | 4 | 4 | 4 | 1.4 | 126423242 | 123550517 | tier1 | CDS-5UTR | 3607 | NA | 0.38706 |
| PRAD | TCGA-VN-A88P-01A | TCGA-VN-A88P | ZNF148|MYLK | ZNF148 | MYLK | 3 | 3 | -1 | -1 | 2 | 4 | 4 | 0.023 | 125042153 | 123512691 | tier2 | 5UTR-5UTR | 20375 | NA | 0 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | NF1|MAP2K4 | NF1 | MAP2K4 | 17 | 17 | 1 | 1 | 18 | 28 | 25 | 0.14 | 29509683 | 12028611 | tier1 | In-frame | 11408 | NA | 0.39245 |
| BRCA | TCGA-C8-A1HK-01A | TCGA-C8-A1HK | KIAA0240|CYB5R4 | KIAA0240 | CYB5R4 | 6 | 6 | 1 | 1 | 12 | 9 | 7 | 0.15 | 42790741 | 84644314 | tier1 | Out-of-frame | 8759 | NA | 0.35485 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | MDN1|CYB5R4 | MDN1 | CYB5R4 | 6 | 6 | -1 | 1 | 8 | 2 | 2 | 1.5 | 90482292 | 84603241 | tier1 | In-frame | 10131 | NA | 0.34331 |
| LUAD | TCGA-78-7542-01A | TCGA-78-7542 | ACTB|COL17A1 | ACTB | COL17A1 | 7 | 10 | -1 | -1 | 4 | 3 | 2 | 0.39 | 5567255 | 105845629 | tier1 | NA | 336 | NA | 0.37621 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | OBFC1|COL17A1 | OBFC1 | COL17A1 | 10 | 10 | -1 | -1 | 5 | 42 | 42 | 0.082 | 105648830 | 105795321 | tier1 | In-frame | 11987 | NA | 0.36241 |
| PRAD | TCGA-EJ-7789-01A | TCGA-EJ-7789 | BCKDHB|ME1 | BCKDHB | ME1 | 6 | 6 | 1 | -1 | 4 | 7 | 5 | 0.45 | 80912929 | 84117620 | tier1 | In-frame | 2012 | NA | 0.34385 |
| LGG | TCGA-DB-A4XB-01A | TCGA-DB-A4XB | DNM2|PDE4A | DNM2 | PDE4A | 19 | 19 | 1 | 1 | 12 | 6 | 6 | 0.079 | 10829079 | 10556894 | tier1 | In-frame | 4978 | NA | 0.37789 |
| LUSC | TCGA-37-A5EN-01A | TCGA-37-A5EN | ZNF653|PDE4A | ZNF653 | PDE4A | 19 | 19 | -1 | 1 | 2 | 1 | 1 | 0.003 | 11609111 | 10527560 | tier2 | NA | 20611 | NA | 0 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | ILF3|PDE4A | ILF3 | PDE4A | 19 | 19 | 1 | 1 | 3 | 15 | 13 | 0.3 | 10765163 | 10556894 | tier1 | 5UTR-CDS | 8209 | NA | 0.37592 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | ZNF699|ELAVL1 | ZNF699 | ELAVL1 | 19 | 19 | -1 | -1 | 10 | 4 | 4 | 0.68 | 9413054 | 8056715 | tier1 | Out-of-frame | 20627 | NA | 0 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | PLS1|CLDN18 | PLS1 | CLDN18 | 3 | 3 | 1 | 1 | 42 | 9 | 5 | 0.47 | 142315351 | 137742500 | tier1 | 5UTR-CDS | 13045 | NA | 0.3475 |
| LGG | TCGA-E1-5303-01A | TCGA-E1-5303 | ARMC8|CLDN18 | ARMC8 | CLDN18 | 3 | 3 | 1 | 1 | 5 | 9 | 7 | 0.6 | 137906441 | 137742500 | tier1 | 5UTR-CDS | 1418 | NA | 0.34765 |
| BRCA | TCGA-AN-A0XU-01A | TCGA-AN-A0XU | ABTB2|ATXN3 | ABTB2 | ATXN3 | 11 | 14 | -1 | -1 | 2 | 6 | 6 | 0.35 | 34378248 | 92563182 | tier2 | Out-of-frame | 132 | NA | 0.36783 |
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