TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BLCA	TCGA-ZF-A9RF-01A	TCGA-ZF-A9RF	WDYHV1\|WISP2	WDYHV1	WISP2	8	20	1	1	2	1	1	100	124429172	43355728	tier2	Out-of-frame	19825	NA	0
BRCA	TCGA-AC-A62V-01A	TCGA-AC-A62V	APPBP2\|WISP2	APPBP2	WISP2	17	20	-1	1	4	2	2	4.5	58556509	43348538	tier1	Out-of-frame	1157	NA	0.3703
SKCM	TCGA-D3-A1Q1-06A	TCGA-D3-A1Q1	USP10\|ATP2C2	USP10	ATP2C2	16	16	1	1	7	35	30	0.42	84773975	84442011	tier1	Out-of-frame	19301	validated	0
BRCA	TCGA-AR-A250-01A	TCGA-AR-A250	SMURF2\|NGFR	SMURF2	NGFR	17	17	-1	1	14	16	16	0.13	62657947	47579425	tier1	Out-of-frame	16456	NA	0
PCPG	TCGA-QT-A5XN-01A	TCGA-QT-A5XN	KIAA1737\|NGFR	KIAA1737	NGFR	14	17	1	1	16	16	15	0.16	77564704	47579425	tier1	5UTR-CDS	8900	NA	0.37599
CESC	TCGA-C5-A7CO-01A	TCGA-C5-A7CO	HMHA1\|ABCA7	HMHA1	ABCA7	19	19	1	1	2	3	3	0.3	1083352	1061781	tier3	In-frame	7875	NA	0.34949
BRCA	TCGA-XX-A89A-01A	TCGA-XX-A89A	TRIT1\|CHI3L2	TRIT1	CHI3L2	1	1	-1	1	93	85	69	2	40348990	111772474	tier1	Out-of-frame	18696	NA	0
PRAD	TCGA-HC-7818-01A	TCGA-HC-7818	C19orf48\|CHI3L2	C19orf48	CHI3L2	19	1	-1	1	2	16	13	0.45	51300962	111772314	tier3	3UTR-5UTR	2578	NA	0
KIRP	TCGA-Q2-A5QZ-01A	TCGA-Q2-A5QZ	KIAA0240\|PMS1	KIAA0240	PMS1	6	2	1	1	3	23	16	0.018	42749839	190728469	tier1	5UTR-CDS	8762	NA	0.36692
SARC	TCGA-WK-A8Y0-01A	TCGA-WK-A8Y0	SOCS6\|PMS1	SOCS6	PMS1	18	2	1	1	6	9	9	0.19	67956326	190738222	tier1	5UTR-CDS	16577	NA	0
SARC	TCGA-DX-A23U-01A	TCGA-DX-A23U	RAB3B\|PKN2	RAB3B	PKN2	1	1	-1	1	25	19	19	0.81	52442562	89206671	tier1	In-frame	14080	NA	0
PRAD	TCGA-FC-7708-01A	TCGA-FC-7708	MPDU1\|GLP2R	MPDU1	GLP2R	17	17	1	1	3	6	5	0.021	7487283	9737124	tier1	Out-of-frame	10588	NA	0.36087
HNSC	TCGA-BA-5555-01A	TCGA-BA-5555	ARHGDIA\|ERBB3	ARHGDIA	ERBB3	17	12	-1	1	2	14	11	1.5	79825598	56492035	tier3	3UTR-5UTR	1269	NA	0.38424
HNSC	TCGA-UF-A718-01A	TCGA-UF-A718	DYNC1H1\|ERBB3	DYNC1H1	ERBB3	14	12	1	1	2	16	15	3	102517128	56492035	tier3	3UTR-5UTR	5203	NA	0.38469
HNSC	TCGA-DQ-5624-01A	TCGA-DQ-5624	KRT6A\|ERBB3	KRT6A	ERBB3	12	12	-1	1	2	3	2	0.04	52880958	56492035	tier4	3UTR-5UTR	9159	NA	0.38668
HNSC	TCGA-DQ-7595-01A	TCGA-DQ-7595	PCNXL3\|ERBB3	PCNXL3	ERBB3	11	12	1	1	2	7	4	0.12	65404910	56492035	tier3	3UTR-5UTR	12438	NA	0.383
HNSC	TCGA-CN-5356-01A	TCGA-CN-5356	TPT1\|ERBB3	TPT1	ERBB3	13	12	-1	1	2	4	2	2.8	45911313	56492035	tier4	3UTR-5UTR	18504	NA	0
LGG	TCGA-E1-5307-01A	TCGA-E1-5307	EIF4G2\|ERBB3	EIF4G2	ERBB3	11	12	-1	1	2	4	2	0.84	10818601	56492035	tier3	NA	5467	NA	0.38493
PAAD	TCGA-HZ-7924-01A	TCGA-HZ-7924	S100A6\|ERBB3	S100A6	ERBB3	1	12	-1	1	2	204	174	0.14	153507075	56492035	tier4	3UTR-5UTR	15238	NA	0
READ	TCGA-AG-3725-01A	TCGA-AG-3725	FAM129B\|ERBB3	FAM129B	ERBB3	9	12	-1	1	2	4	4	0.02	130267619	56492035	tier4	3UTR-5UTR	6037	NA	0.38404

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