Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 334 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-FD-A6TC-01A | TCGA-FD-A6TC | OVOL2|CBLN4 | OVOL2 | CBLN4 | 20 | 20 | -1 | -1 | 2 | 7 | 4 | 0.013 | 18022178 | 54575903 | tier2 | Out-of-frame | 12118 | NA | 0.35154 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | USP35|CHRDL2 | USP35 | CHRDL2 | 11 | 11 | 1 | -1 | 13 | 5 | 5 | 0.97 | 77911854 | 74429877 | tier1 | Out-of-frame | 19369 | NA | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | PGM2L1|CHRDL2 | PGM2L1 | CHRDL2 | 11 | 11 | -1 | -1 | 3 | 21 | 18 | 6.9 | 74109096 | 74424524 | tier1 | In-frame | 12667 | NA | 0.35877 |
| GBM | TCGA-27-2528-01A | TCGA-27-2528 | CREB5|KCNH2 | CREB5 | KCNH2 | 7 | 7 | 1 | -1 | 26 | 48 | 42 | 1.4 | 28610155 | 150646137 | tier1 | Out-of-frame | 4197 | non-validated | 0.37964 |
| PRAD | TCGA-G9-A9S4-01A | TCGA-G9-A9S4 | SUFU|KCNH2 | SUFU | KCNH2 | 10 | 7 | 1 | -1 | 11 | 17 | 17 | 0.84 | 104309863 | 150672029 | tier1 | In-frame | 17165 | NA | 0 |
| BLCA | TCGA-FD-A3SQ-01A | TCGA-FD-A3SQ | SERINC2|EIF2AK2 | SERINC2 | EIF2AK2 | 1 | 2 | 1 | -1 | 2 | 9 | 6 | 0.063 | 31907521 | 37342384 | tier4 | NA | 15630 | NA | 0 |
| BRCA | TCGA-E2-A1B1-01A | TCGA-E2-A1B1 | AHNAK|EIF2AK2 | AHNAK | EIF2AK2 | 11 | 2 | -1 | -1 | 2 | 19 | 14 | 1.9 | 62283375 | 37342384 | tier3 | NA | 691 | NA | 0.38379 |
| BRCA | TCGA-E9-A1RD-01A | TCGA-E9-A1RD | COX6C|EIF2AK2 | COX6C | EIF2AK2 | 8 | 2 | -1 | -1 | 2 | 44 | 2 | 1 | 100890379 | 37342384 | tier4 | NA | 4091 | NA | 0.38219 |
| KIRC | TCGA-B4-5378-01A | TCGA-B4-5378 | RHOB|EIF2AK2 | RHOB | EIF2AK2 | 2 | 2 | 1 | -1 | 2 | 5 | 3 | 0.85 | 20649200 | 37342384 | tier3 | NA | 14653 | NA | 0 |
| KIRC | TCGA-B0-5691-01A | TCGA-B0-5691 | TSPAN1|EIF2AK2 | TSPAN1 | EIF2AK2 | 1 | 2 | 1 | -1 | 2 | 2 | 1 | 0.58 | 46651630 | 37342384 | tier3 | NA | 18782 | NA | 0 |
| LGG | TCGA-DU-6404-01A | TCGA-DU-6404 | CKB|EIF2AK2 | CKB | EIF2AK2 | 14 | 2 | -1 | -1 | 2 | 2 | 1 | 0.61 | 103986004 | 37342384 | tier4 | NA | 3748 | non-validated | 0.38201 |
| LGG | TCGA-DU-6393-01A | TCGA-DU-6393 | NUMA1|EIF2AK2 | NUMA1 | EIF2AK2 | 11 | 2 | -1 | -1 | 2 | 18 | 17 | 0.062 | 71713911 | 37342384 | tier3 | NA | 11885 | NA | 0.3822 |
| LGG | TCGA-DB-5273-01A | TCGA-DB-5273 | SEPT3|EIF2AK2 | SEPT3 | EIF2AK2 | 22 | 2 | 1 | -1 | 2 | 1 | 1 | 0.039 | 42394225 | 37342384 | tier3 | NA | 15597 | NA | 0 |
| LUAD | TCGA-97-7552-01A | TCGA-97-7552 | PLEC|EIF2AK2 | PLEC | EIF2AK2 | 8 | 2 | -1 | -1 | 2 | 6 | 5 | 0.13 | 144989321 | 37342384 | tier4 | NA | 12986 | NA | 0.38079 |
| LUAD | TCGA-97-7547-01A | TCGA-97-7547 | SEC61A1|EIF2AK2 | SEC61A1 | EIF2AK2 | 3 | 2 | 1 | -1 | 2 | 14 | 12 | 1.3 | 127790525 | 37342384 | tier4 | NA | 15527 | NA | 0 |
| LUSC | TCGA-34-5241-01A | TCGA-34-5241 | DDIT4|EIF2AK2 | DDIT4 | EIF2AK2 | 10 | 2 | 1 | -1 | 2 | 8 | 5 | 0.051 | 74035794 | 37342384 | tier3 | NA | 4639 | NA | 0.38322 |
| LUSC | TCGA-85-8582-01A | TCGA-85-8582 | JUP|EIF2AK2 | JUP | EIF2AK2 | 17 | 2 | -1 | -1 | 2 | 1 | 1 | 100 | 39775692 | 37342384 | tier3 | NA | 8508 | NA | 0.38568 |
| STAD | TCGA-BR-8484-01A | TCGA-BR-8484 | DDX17|EIF2AK2 | DDX17 | EIF2AK2 | 22 | 2 | -1 | -1 | 2 | 3 | 1 | 0.003 | 38879445 | 37342384 | tier3 | NA | 4648 | NA | 0.38397 |
| STAD | TCGA-BR-8679-01A | TCGA-BR-8679 | TPT1|EIF2AK2 | TPT1 | EIF2AK2 | 13 | 2 | -1 | -1 | 2 | 29 | 6 | 0.009 | 45911313 | 37342384 | tier3 | NA | 18503 | NA | 0 |
| THCA | TCGA-CE-A483-01A | TCGA-CE-A483 | EIF4G2|EIF2AK2 | EIF4G2 | EIF2AK2 | 11 | 2 | -1 | -1 | 2 | 11 | 11 | 0.034 | 10818601 | 37342384 | tier3 | NA | 5466 | NA | 0.38303 |
|
Showing page 334 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.