Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-CU-A3YL-01A | TCGA-CU-A3YL | NAA35|LAMC3 | NAA35 | LAMC3 | 9 | 9 | 1 | 1 | 9 | 5 | 5 | 0.58 | 88628812 | 133951218 | tier1 | In-frame | 11043 | NA | 0.34097 |
| UCEC | TCGA-B5-A1MS-01B | TCGA-B5-A1MS | GATAD2B|LAMC3 | GATAD2B | LAMC3 | 1 | 9 | -1 | 1 | 15 | 16 | 10 | 0.47 | 153895209 | 133936422 | tier1 | 5UTR-CDS | 6985 | NA | 0.36866 |
| LUAD | TCGA-05-4402-01A | TCGA-05-4402 | ZNF644|PTGER3 | ZNF644 | PTGER3 | 1 | 1 | -1 | -1 | 9 | 8 | 5 | 0.39 | 91487547 | 71318542 | tier1 | 5UTR-3UTR | 20607 | NA | 0 |
| PCPG | TCGA-QT-A5XJ-01A | TCGA-QT-A5XJ | XXbac-B461K10.4|PTGER3 | XXbac-B461K10.4 | PTGER3 | 22 | 1 | -1 | -1 | 37 | 10 | 9 | 2.3 | 18507047 | 71318542 | tier2 | 5UTR-3UTR | 19999 | NA | 0 |
| SARC | TCGA-MB-A5Y8-01A | TCGA-MB-A5Y8 | ANKRD13C|PTGER3 | ANKRD13C | PTGER3 | 1 | 1 | -1 | -1 | 6 | 3 | 3 | 0.28 | 70766447 | 71440071 | tier1 | In-frame | 966 | NA | 0.35672 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | RAI14|MAPK9 | RAI14 | MAPK9 | 5 | 5 | 1 | -1 | 49 | 28 | 28 | 0.072 | 34757703 | 179696409 | tier1 | In-frame | 14209 | NA | 0 |
| LUAD | TCGA-93-A4JQ-01A | TCGA-93-A4JQ | MED13L|COL23A1 | MED13L | COL23A1 | 12 | 5 | -1 | -1 | 30 | 17 | 14 | 0.3 | 116714865 | 177690325 | tier1 | In-frame | 10177 | NA | 0.36506 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | PLS1|PIK3CB | PLS1 | PIK3CB | 3 | 3 | 1 | -1 | 10 | 8 | 8 | 0.18 | 142315351 | 138456728 | tier1 | 5UTR-CDS | 13046 | NA | 0.37719 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | AFF4|FSTL4 | AFF4 | FSTL4 | 5 | 5 | -1 | -1 | 5 | 3 | 3 | 0.53 | 132227856 | 132561511 | tier1 | Out-of-frame | 595 | NA | 0.37128 |
| LUAD | TCGA-49-6745-01A | TCGA-49-6745 | TTC39C|LAMA3 | TTC39C | LAMA3 | 18 | 18 | 1 | 1 | 27 | 19 | 15 | 2 | 21663045 | 21526108 | tier1 | In-frame | 18857 | NA | 0 |
| LUSC | TCGA-66-2766-01A | TCGA-66-2766 | ESCO1|LAMA3 | ESCO1 | LAMA3 | 18 | 18 | -1 | 1 | 6 | 6 | 6 | 0.51 | 19140820 | 21353461 | tier1 | In-frame | 5801 | non-validated | 0.35774 |
| ACC | TCGA-OR-A5KX-01A | TCGA-OR-A5KX | FN3KRP|KCNQ1 | FN3KRP | KCNQ1 | 17 | 11 | 1 | 1 | 25 | 10 | 10 | 0.71 | 80684478 | 2868997 | tier1 | In-frame | 6598 | NA | 0.36203 |
| PRAD | TCGA-V1-A8MG-01A | TCGA-V1-A8MG | FOXN3|KCNQ1 | FOXN3 | KCNQ1 | 14 | 11 | -1 | 1 | 7 | 3 | 3 | 0.87 | 89747294 | 2790074 | tier1 | Out-of-frame | 6673 | NA | 0.36453 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | TARBP1|ARID4B | TARBP1 | ARID4B | 1 | 1 | -1 | -1 | 3 | 4 | 3 | 0.32 | 234553830 | 235341228 | tier1 | Out-of-frame | 17414 | NA | 0 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | RFX3|ARID4B | RFX3 | ARID4B | 9 | 1 | -1 | -1 | 4 | 2 | 2 | 0.17 | 3525747 | 235359430 | tier1 | 5UTR-CDS | 14611 | NA | 0 |
| LUAD | TCGA-91-8497-01A | TCGA-91-8497 | NFAT5|HHAT | NFAT5 | HHAT | 16 | 1 | 1 | 1 | 23 | 6 | 6 | 0.53 | 69602451 | 210560812 | tier2 | 5UTR-CDS | 11440 | NA | 0.36092 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | EDEM3|HHAT | EDEM3 | HHAT | 1 | 1 | -1 | 1 | 36 | 26 | 20 | 3 | 184677287 | 210847630 | tier1 | Out-of-frame | 5276 | NA | 0.33751 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | KIF5B|HHAT | KIF5B | HHAT | 10 | 1 | -1 | 1 | 21 | 14 | 11 | 2.7 | 32337392 | 210637849 | tier1 | In-frame | 9010 | NA | 0.36358 |
| BLCA | TCGA-XF-A8HD-01A | TCGA-XF-A8HD | EPB41L1|ATP9A | EPB41L1 | ATP9A | 20 | 20 | 1 | -1 | 10 | 7 | 7 | 0.057 | 34700402 | 50346517 | tier1 | 5UTR-CDS | 5635 | NA | 0.36888 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | TMEM175|ATP9A | TMEM175 | ATP9A | 4 | 20 | 1 | -1 | 4 | 8 | 7 | 0.58 | 949678 | 50217886 | tier1 | Out-of-frame | 17989 | NA | 0 |
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