Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-NJ-A7XG-01A | TCGA-NJ-A7XG | EZR|ROS1 | EZR | ROS1 | 6 | 6 | -1 | -1 | 170 | 175 | 169 | 0.82 | 159191796 | 117645578 | tier1 | In-frame | 5967 | NA | 0.38331 |
| KIRP | TCGA-B9-A44B-01A | TCGA-B9-A44B | PRUNE2|HDAC9 | PRUNE2 | HDAC9 | 9 | 7 | -1 | 1 | 2 | 2 | 2 | 0.6 | 79318253 | 18684294 | tier2 | Out-of-frame | 13671 | validated | 0.36468 |
| SKCM | TCGA-EB-A44R-06A | TCGA-EB-A44R | MICALL2|HDAC9 | MICALL2 | HDAC9 | 7 | 7 | -1 | 1 | 7 | 9 | 9 | 0.15 | 1484288 | 18684294 | tier1 | Out-of-frame | 10350 | NA | 0.3678 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | ELMO1|HDAC9 | ELMO1 | HDAC9 | 7 | 7 | -1 | 1 | 11 | 7 | 7 | 2.3 | 37488278 | 18535885 | tier1 | 5UTR-5UTR | 5522 | NA | 0.37476 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | SNX29|TNFRSF17 | SNX29 | TNFRSF17 | 16 | 16 | 1 | 1 | 4 | 2 | 2 | 0.002 | 12155503 | 12060052 | tier1 | In-frame | 16549 | NA | 0 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | SNX29|TNFRSF17 | SNX29 | TNFRSF17 | 16 | 16 | 1 | 1 | 9 | 5 | 5 | 0.002 | 12172772 | 12060052 | tier1 | In-frame | 16548 | NA | 0 |
| STAD | TCGA-RD-A8MW-01A | TCGA-RD-A8MW | ANKIB1|TNFRSF17 | ANKIB1 | TNFRSF17 | 7 | 16 | 1 | 1 | 4 | 16 | 14 | 0.24 | 91875833 | 12060052 | tier1 | 5UTR-CDS | 931 | NA | 0.36856 |
| BRCA | TCGA-A2-A3KD-01A | TCGA-A2-A3KD | ASPH|RSF1 | ASPH | RSF1 | 8 | 11 | -1 | -1 | 11 | 13 | 13 | 0.18 | 62430087 | 77413540 | tier1 | Out-of-frame | 1542 | NA | 0.36108 |
| BRCA | TCGA-BH-A1EN-01A | TCGA-BH-A1EN | EXT1|RSF1 | EXT1 | RSF1 | 8 | 11 | -1 | -1 | 26 | 15 | 13 | 0.28 | 118825111 | 77451981 | tier1 | In-frame | 5927 | NA | 0.36342 |
| BRCA | TCGA-AR-A2LJ-01A | TCGA-AR-A2LJ | NCOR1|RSF1 | NCOR1 | RSF1 | 17 | 11 | -1 | -1 | 23 | 15 | 14 | 0.29 | 16118676 | 77396204 | tier1 | 5UTR-CDS | 11237 | NA | 0.37474 |
| LUAD | TCGA-78-7150-01A | TCGA-78-7150 | SOCS7|RSF1 | SOCS7 | RSF1 | 17 | 11 | 1 | -1 | 16 | 11 | 8 | 0.88 | 36533668 | 77475734 | tier1 | In-frame | 16583 | NA | 0 |
| LUSC | TCGA-56-A4BX-01A | TCGA-56-A4BX | GTF2F2|RSF1 | GTF2F2 | RSF1 | 13 | 11 | 1 | -1 | 6 | 6 | 5 | 0.004 | 45725966 | 77413540 | tier1 | In-frame | 7530 | NA | 0.36469 |
| STAD | TCGA-VQ-A8PU-01A | TCGA-VQ-A8PU | TMEM179B|RSF1 | TMEM179B | RSF1 | 11 | 11 | 1 | -1 | 3 | 39 | 29 | 0.35 | 62554999 | 77413540 | tier1 | Out-of-frame | 17991 | NA | 0 |
| BRCA | TCGA-E2-A15E-01A | TCGA-E2-A15E | HEYL|COL9A2 | HEYL | COL9A2 | 1 | 1 | -1 | -1 | 21 | 5 | 5 | 0.37 | 40105218 | 40777387 | tier1 | Out-of-frame | 7729 | validated | 0.37277 |
| LUAD | TCGA-44-6147-01A | TCGA-44-6147 | TAF9|ADAMTS6 | TAF9 | ADAMTS6 | 5 | 5 | -1 | -1 | 2 | 4 | 3 | 0.43 | 68662330 | 64625310 | tier2 | In-frame | 17355 | non-validated | 0 |
| LUSC | TCGA-34-8454-01A | TCGA-34-8454 | SPSB1|H6PD | SPSB1 | H6PD | 1 | 1 | 1 | 1 | 4 | 3 | 2 | 0.083 | 9353130 | 9322118 | tier1 | 5UTR-CDS | 16776 | NA | 0 |
| THCA | TCGA-BJ-A0Z9-01A | TCGA-BJ-A0Z9 | SPSB1|H6PD | SPSB1 | H6PD | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.083 | 9353130 | 9322118 | tier3 | 5UTR-CDS | 16777 | NA | 0 |
| THCA | TCGA-J8-A3O2-01A | TCGA-J8-A3O2 | SPSB1|H6PD | SPSB1 | H6PD | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 0.083 | 9353130 | 9322118 | tier1 | 5UTR-CDS | 16778 | NA | 0 |
| BRCA | TCGA-AR-A0TU-01A | TCGA-AR-A0TU | ZDHHC2|LTBP1 | ZDHHC2 | LTBP1 | 8 | 2 | 1 | 1 | 3 | 7 | 7 | 0.01 | 17014362 | 33572434 | tier1 | In-frame | 20212 | NA | 0 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | RAB21|SLC4A8 | RAB21 | SLC4A8 | 12 | 12 | 1 | 1 | 24 | 41 | 39 | 0.97 | 72167802 | 51863398 | tier1 | Out-of-frame | 14061 | NA | 0 |
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