Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-B5-A1MW-01A | TCGA-B5-A1MW | KIAA0247|SLC39A9 | KIAA0247 | SLC39A9 | 14 | 14 | 1 | 1 | 4 | 1 | 1 | 0.056 | 70078545 | 69928414 | tier2 | 5UTR-CDS | 8767 | NA | 0.34143 |
| STAD | TCGA-R5-A805-01A | TCGA-R5-A805 | AKAP13|MUSK | AKAP13 | MUSK | 15 | 9 | 1 | 1 | 2 | 29 | 27 | 0.45 | 86228104 | 113509921 | tier2 | In-frame | 730 | NA | 0.38818 |
| STAD | TCGA-VQ-A91Q-01A | TCGA-VQ-A91Q | DLG1|MUSK | DLG1 | MUSK | 3 | 9 | -1 | 1 | 2 | 67 | 61 | 0.17 | 197009550 | 113457683 | tier2 | Out-of-frame | 4874 | NA | 0.38593 |
| KIRP | TCGA-J7-8537-01A | TCGA-J7-8537 | KIAA0319L|UBA6 | KIAA0319L | UBA6 | 1 | 4 | -1 | -1 | 55 | 42 | 40 | 1.1 | 35972213 | 68534392 | tier1 | In-frame | 8778 | NA | 0.35095 |
| BLCA | TCGA-K4-A4AC-01A | TCGA-K4-A4AC | EPN2|MAP2K3 | EPN2 | MAP2K3 | 17 | 17 | 1 | 1 | 24 | 39 | 36 | 1.4 | 19140844 | 21201725 | tier1 | 5UTR-CDS | 5689 | NA | 0.39068 |
| LIHC | TCGA-CC-A7IJ-01A | TCGA-CC-A7IJ | MOBKL2A|VCL | MOBKL2A | VCL | 19 | 10 | -1 | 1 | 4 | 7 | 7 | 0.054 | 2096225 | 75877781 | tier1 | 5UTR-CDS | 10566 | NA | 0.37626 |
| LUAD | TCGA-44-3396-01A | TCGA-44-3396 | C10orf11|VCL | C10orf11 | VCL | 10 | 10 | 1 | 1 | 4 | 4 | 2 | 0.68 | 77198252 | 75802841 | tier1 | Out-of-frame | 2303 | NA | 0 |
| PRAD | TCGA-ZG-A9LY-01A | TCGA-ZG-A9LY | ATF6|VCL | ATF6 | VCL | 1 | 10 | 1 | 1 | 13 | 19 | 18 | 0.12 | 161736232 | 75854029 | tier1 | Out-of-frame | 1604 | NA | 0.3837 |
| PRAD | TCGA-ZG-A9LY-01A | TCGA-ZG-A9LY | ELK4|VCL | ELK4 | VCL | 1 | 10 | -1 | 1 | 4 | 11 | 10 | 0.58 | 205592804 | 75855414 | tier1 | Out-of-frame | 5508 | NA | 0.38194 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | CUL4B|DAPK2 | CUL4B | DAPK2 | X | 15 | -1 | -1 | 4 | 3 | 3 | 0.45 | 119691779 | 64275953 | tier1 | Out-of-frame | 4438 | NA | 0.37784 |
| LUSC | TCGA-43-2581-01A | TCGA-43-2581 | FAM100B|TIMP2 | FAM100B | TIMP2 | 17 | 17 | 1 | -1 | 69 | 35 | 35 | 0.21 | 74262050 | 76870001 | tier2 | Out-of-frame | 5987 | NA | 0.35595 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | TRIP11|CYP46A1 | TRIP11 | CYP46A1 | 14 | 14 | -1 | 1 | 4 | 3 | 3 | 0.23 | 92465584 | 100165803 | tier1 | Out-of-frame | 18681 | NA | 0 |
| BRCA | TCGA-D8-A27V-01A | TCGA-D8-A27V | SUCLA2|CASR | SUCLA2 | CASR | 13 | 3 | -1 | 1 | 2 | 1 | 1 | 0.39 | 48611742 | 121972795 | tier2 | 5UTR-5UTR | 17159 | NA | 0 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | FAM162A|CASR | FAM162A | CASR | 3 | 3 | 1 | 1 | 12 | 12 | 12 | 0.54 | 122103146 | 121980375 | tier1 | Out-of-frame | 6074 | NA | 0.3748 |
| OV | TCGA-23-1120-01A | TCGA-23-1120 | LPP|CASR | LPP | CASR | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 0.27 | 188202492 | 121980375 | tier2 | In-frame | 9456 | NA | 0.38094 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | LBH|FLT4 | LBH | FLT4 | 2 | 5 | 1 | -1 | 148 | 142 | 124 | 0.05 | 30457373 | 180058778 | tier1 | Out-of-frame | 9249 | NA | 0.38391 |
| BLCA | TCGA-E5-A2PC-01A | TCGA-E5-A2PC | NUP155|TRIO | NUP155 | TRIO | 5 | 5 | -1 | 1 | 71 | 49 | 44 | 0.022 | 37314300 | 14531853 | tier1 | Out-of-frame | 11919 | NA | 0.38447 |
| HNSC | TCGA-BA-5153-01A | TCGA-BA-5153 | ARIH2|TRIO | ARIH2 | TRIO | 3 | 5 | 1 | 1 | 4 | 4 | 4 | 0.046 | 48956431 | 14286980 | tier1 | 5UTR-CDS | 1392 | non-validated | 0.38737 |
| BRCA | TCGA-AO-A12E-01A | TCGA-AO-A12E | CCDC132|CDH1 | CCDC132 | CDH1 | 7 | 16 | 1 | 1 | 26 | 15 | 15 | 2.2 | 92940584 | 68862077 | tier1 | In-frame | 3116 | NA | 0.37086 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | TMCO7|CDH1 | TMCO7 | CDH1 | 16 | 16 | 1 | 1 | 10 | 6 | 6 | 2.9 | 68901123 | 68855904 | tier1 | In-frame | 17911 | validated | 0 |
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