Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | GRIP1|HSD17B6 | GRIP1 | HSD17B6 | 12 | 12 | -1 | 1 | 5 | 3 | 3 | 1.1 | 66856704 | 57156982 | tier1 | NA | 7459 | NA | 0.36859 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | MTERFD1|HSD17B6 | MTERFD1 | HSD17B6 | 8 | 12 | -1 | 1 | 8 | 13 | 13 | 100 | 97263134 | 57167618 | tier1 | CDS-5UTR | 10782 | NA | 0.34516 |
| LGG | TCGA-QH-A6CV-01A | TCGA-QH-A6CV | PRRC2B|NR1H3 | PRRC2B | NR1H3 | 9 | 11 | 1 | 1 | 53 | 39 | 31 | 0.31 | 134319715 | 47282792 | tier1 | In-frame | 13639 | NA | 0.36981 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | LDLRAD3|CD44 | LDLRAD3 | CD44 | 11 | 11 | 1 | 1 | 9 | 36 | 34 | 0.62 | 35965694 | 35198122 | tier1 | In-frame | 9275 | NA | 0.37365 |
| OV | TCGA-29-1783-01A | TCGA-29-1783 | ADNP|KCNG1 | ADNP | KCNG1 | 20 | 20 | -1 | -1 | 14 | 13 | 11 | 1.7 | 49547363 | 49628953 | tier1 | 5UTR-5UTR | 527 | NA | 0.35853 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | ADNP|KCNG1 | ADNP | KCNG1 | 20 | 20 | -1 | -1 | 3 | 13 | 13 | 1.7 | 49547363 | 49626901 | tier1 | 5UTR-5UTR | 528 | NA | 0.35853 |
| COAD | TCGA-DM-A28F-01A | TCGA-DM-A28F | PROSER1|MIPEP | PROSER1 | MIPEP | 13 | 13 | -1 | -1 | 8 | 10 | 8 | 1.5 | 39603418 | 24444334 | tier1 | Out-of-frame | 13590 | NA | 0.33523 |
| LUAD | TCGA-93-A4JO-01A | TCGA-93-A4JO | ZDHHC20|MIPEP | ZDHHC20 | MIPEP | 13 | 13 | -1 | -1 | 121 | 141 | 124 | 0.16 | 21987791 | 24330757 | tier4 | Out-of-frame | 20218 | NA | 0 |
| LUSC | TCGA-46-3767-01A | TCGA-46-3767 | SACS|MIPEP | SACS | MIPEP | 13 | 13 | -1 | -1 | 13 | 11 | 8 | 0.031 | 23985359 | 24415627 | tier1 | In-frame | 15259 | NA | 0 |
| OV | TCGA-31-1959-01A | TCGA-31-1959 | TBL1XR1|MIPEP | TBL1XR1 | MIPEP | 3 | 13 | -1 | -1 | 5 | 27 | 20 | 0.68 | 176914909 | 24330757 | tier1 | 5UTR-CDS | 17551 | NA | 0 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 5 | 7 | 7 | 0.58 | 62037478 | 61995793 | tier1 | Out-of-frame | 14935 | NA | 0 |
| BRCA | TCGA-EW-A1P1-01A | TCGA-EW-A1P1 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 18 | 8 | 8 | 0.58 | 62037478 | 61909829 | tier1 | Out-of-frame | 14937 | NA | 0 |
| HNSC | TCGA-BB-4227-01A | TCGA-BB-4227 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 10 | 7 | 6 | 0.58 | 62037478 | 61952220 | tier1 | In-frame | 14934 | NA | 0 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 3 | 2 | 2 | 0.58 | 62037478 | 61909829 | tier1 | Out-of-frame | 14936 | validated | 0 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 13 | 19 | 16 | 0.58 | 62037478 | 61952220 | tier1 | In-frame | 14933 | NA | 0 |
| SKCM | TCGA-D3-A8GM-06A | TCGA-D3-A8GM | DAAM1|PRKCH | DAAM1 | PRKCH | 14 | 14 | 1 | 1 | 34 | 16 | 14 | 0.21 | 59758024 | 61995793 | tier1 | Out-of-frame | 4524 | NA | 0.38575 |
| SKCM | TCGA-FW-A3I3-06A | TCGA-FW-A3I3 | GPHN|PRKCH | GPHN | PRKCH | 14 | 14 | 1 | 1 | 5 | 2 | 2 | 0.045 | 66975309 | 61857943 | tier1 | Out-of-frame | 7338 | NA | 0.38637 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | SPEN|TNFRSF1B | SPEN | TNFRSF1B | 1 | 1 | 1 | 1 | 23 | 12 | 12 | 0.13 | 16242774 | 12262024 | tier1 | In-frame | 16719 | NA | 0 |
| SKCM | TCGA-FS-A1ZE-06A | TCGA-FS-A1ZE | VPS13D|TNFRSF1B | VPS13D | TNFRSF1B | 1 | 1 | 1 | 1 | 21 | 7 | 7 | 2.1 | 12476880 | 12252488 | tier1 | Out-of-frame | 19633 | NA | 0 |
| ESCA | TCGA-JY-A6F8-01A | TCGA-JY-A6F8 | KIAA0247|SLC39A9 | KIAA0247 | SLC39A9 | 14 | 14 | 1 | 1 | 16 | 82 | 77 | 0.056 | 70170309 | 69908786 | tier1 | In-frame | 8768 | NA | 0.34143 |
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