Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| DLBC | TCGA-GS-A9TV-01A | TCGA-GS-A9TV | GCN1L1|CD74 | GCN1L1 | CD74 | 12 | 5 | -1 | -1 | 2 | 2 | 2 | 0.53 | 120607973 | 149792314 | tier4 | CDS-5UTR | 7012 | NA | 0.36733 |
| KIRC | TCGA-A3-A6NL-01A | TCGA-A3-A6NL | MYH9|CD74 | MYH9 | CD74 | 22 | 5 | -1 | -1 | 2 | 1 | 1 | 0.003 | 36685235 | 149792314 | tier3 | NA | 10901 | NA | 0.38365 |
| BLCA | TCGA-C4-A0F7-01A | TCGA-C4-A0F7 | ICA1|HGF | ICA1 | HGF | 7 | 7 | -1 | -1 | 5 | 6 | 6 | 0.043 | 8301724 | 81374436 | tier1 | 5UTR-CDS | 8045 | validated | 0.36467 |
| SKCM | TCGA-EB-A5SE-01A | TCGA-EB-A5SE | RSBN1L|HGF | RSBN1L | HGF | 7 | 7 | 1 | -1 | 30 | 16 | 14 | 0.054 | 77326372 | 81374436 | tier1 | In-frame | 15141 | NA | 0 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | ATE1|ZRANB1 | ATE1 | ZRANB1 | 10 | 10 | -1 | 1 | 34 | 34 | 32 | 0.002 | 123681864 | 126670278 | tier1 | In-frame | 1594 | NA | 0.35931 |
| BRCA | TCGA-EW-A424-01A | TCGA-EW-A424 | UBE2CBP|SERPINB1 | UBE2CBP | SERPINB1 | 6 | 6 | -1 | -1 | 13 | 9 | 9 | 2.2 | 83775361 | 2840828 | tier1 | CDS-5UTR | 19053 | NA | 0 |
| GBM | TCGA-14-1402-02A | TCGA-14-1402 | PPP1R9A|CYP3A43 | PPP1R9A | CYP3A43 | 7 | 7 | 1 | 1 | 2 | 2 | 2 | 0.18 | 94540820 | 99454456 | tier2 | In-frame | 13383 | non-validated | 0.37529 |
| OV | TCGA-24-1552-01A | TCGA-24-1552 | NUDT19|SLC7A9 | NUDT19 | SLC7A9 | 19 | 19 | 1 | -1 | 13 | 15 | 14 | 0.015 | 33183580 | 33324229 | tier1 | In-frame | 11862 | non-validated | 0.341 |
| SARC | TCGA-DX-A8BN-01A | TCGA-DX-A8BN | KIAA0355|SLC7A9 | KIAA0355 | SLC7A9 | 19 | 19 | 1 | -1 | 67 | 51 | 45 | 0.12 | 34840058 | 33324229 | tier1 | Out-of-frame | 8779 | NA | 0.34664 |
| UCEC | TCGA-BG-A3PP-01A | TCGA-BG-A3PP | ANKRD27|SLC7A9 | ANKRD27 | SLC7A9 | 19 | 19 | -1 | -1 | 26 | 6 | 6 | 0.28 | 33135231 | 33321590 | tier1 | Out-of-frame | 978 | NA | 0.3462 |
| SKCM | TCGA-D9-A4Z5-01A | TCGA-D9-A4Z5 | SOS2|NRXN3 | SOS2 | NRXN3 | 14 | 14 | -1 | 1 | 2 | 1 | 1 | 3.4 | 50600841 | 79423585 | tier3 | Out-of-frame | 16613 | NA | 0 |
| PRAD | TCGA-KC-A7F3-01A | TCGA-KC-A7F3 | ZC3H15|CPS1 | ZC3H15 | CPS1 | 2 | 2 | 1 | 1 | 3 | 6 | 6 | 0.13 | 187351184 | 211454830 | tier1 | In-frame | 20131 | NA | 0 |
| BRCA | TCGA-E9-A1R7-01A | TCGA-E9-A1R7 | ACOT11|C8B | ACOT11 | C8B | 1 | 1 | 1 | -1 | 9 | 14 | 11 | 1.9 | 55051577 | 57417853 | tier1 | In-frame | 280 | NA | 0.36134 |
| BRCA | TCGA-A7-A4SF-01A | TCGA-A7-A4SF | CNOT2|SLC45A4 | CNOT2 | SLC45A4 | 12 | 8 | 1 | -1 | 51 | 34 | 28 | 0.1 | 70713144 | 142231864 | tier1 | In-frame | 3933 | NA | 0.34754 |
| BRCA | TCGA-A2-A25E-01A | TCGA-A2-A25E | TRAPPC9|SLC45A4 | TRAPPC9 | SLC45A4 | 8 | 8 | -1 | -1 | 2 | 3 | 2 | 0.34 | 141407719 | 142231864 | tier4 | Out-of-frame | 18587 | NA | 0 |
| GBM | TCGA-06-0744-01A | TCGA-06-0744 | MRPL50|ERP44 | MRPL50 | ERP44 | 9 | 9 | -1 | -1 | 174 | 450 | 405 | 0.16 | 104160783 | 102822454 | tier1 | Out-of-frame | 10673 | validated | 0.33226 |
| KIRC | TCGA-B0-4811-01A | TCGA-B0-4811 | EPB41L1|PHF20 | EPB41L1 | PHF20 | 20 | 20 | 1 | 1 | 2 | 2 | 2 | 0.042 | 34713449 | 34430495 | tier2 | Out-of-frame | 5643 | NA | 0.37244 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | EPB41L1|PHF20 | EPB41L1 | PHF20 | 20 | 20 | 1 | 1 | 2 | 5 | 4 | 0.042 | 34680735 | 34501171 | tier4 | 5UTR-CDS | 5644 | NA | 0.37244 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | FAM174B|PHF20 | FAM174B | PHF20 | 15 | 20 | -1 | 1 | 12 | 15 | 13 | 0.59 | 93198546 | 34430495 | tier1 | In-frame | 6108 | NA | 0.35211 |
| UCS | TCGA-N8-A4PO-01A | TCGA-N8-A4PO | EPB41L1|PHF20 | EPB41L1 | PHF20 | 20 | 20 | 1 | 1 | 5 | 6 | 4 | 0.042 | 34820721 | 34437311 | tier1 | NA | 5645 | NA | 0.37244 |
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