Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-QK-A8ZB-01A | TCGA-QK-A8ZB | NCK1|HEBP1 | NCK1 | HEBP1 | 3 | 12 | 1 | -1 | 62 | 56 | 52 | 2.1 | 136665137 | 13128413 | tier1 | Out-of-frame | 11155 | NA | 0.37653 |
| HNSC | TCGA-CN-5355-01A | TCGA-CN-5355 | HMGXB3|CAPN1 | HMGXB3 | CAPN1 | 5 | 11 | 1 | 1 | 41 | 17 | 14 | 0.58 | 149380742 | 64972154 | tier1 | 5UTR-CDS | 7871 | NA | 0.36126 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | POLA2|CAPN1 | POLA2 | CAPN1 | 11 | 11 | 1 | 1 | 31 | 25 | 23 | 0.034 | 65029842 | 64972154 | tier1 | In-frame | 13143 | NA | 0.36852 |
| PRAD | TCGA-EJ-7125-01A | TCGA-EJ-7125 | RPLP2|ACPP | RPLP2 | ACPP | 11 | 3 | 1 | 1 | 2 | 1 | 1 | 100 | 812874 | 132036211 | tier3 | 3UTR-5UTR | 15010 | NA | 0 |
| BRCA | TCGA-A7-A6VV-01A | TCGA-A7-A6VV | NIPBL|SLC30A9 | NIPBL | SLC30A9 | 5 | 4 | 1 | 1 | 53 | 46 | 44 | 1.2 | 36877280 | 42062208 | tier1 | 5UTR-CDS | 11566 | NA | 0.34951 |
| PCPG | TCGA-SP-A6QI-01A | TCGA-SP-A6QI | HAND2|SLC30A9 | HAND2 | SLC30A9 | 4 | 4 | -1 | 1 | 21 | 19 | 19 | 0.008 | 174449886 | 42041003 | tier1 | In-frame | 7584 | NA | 0.36987 |
| LUSC | TCGA-60-2721-01A | TCGA-60-2721 | DIP2C|ZMYND11 | DIP2C | ZMYND11 | 10 | 10 | -1 | 1 | 4 | 1 | 1 | 0.35 | 532399 | 225934 | tier4 | CDS-5UTR | 4849 | NA | 0.37305 |
| UCEC | TCGA-EY-A2OQ-01A | TCGA-EY-A2OQ | DIP2C|ZMYND11 | DIP2C | ZMYND11 | 10 | 10 | -1 | 1 | 2 | 2 | 2 | 0.35 | 735434 | 225934 | tier2 | CDS-5UTR | 4850 | NA | 0.37305 |
| BRCA | TCGA-B6-A0RS-01A | TCGA-B6-A0RS | C16orf55|DPEP1 | C16orf55 | DPEP1 | 16 | 16 | 1 | 1 | 4 | 4 | 4 | 0.14 | 89724829 | 89696713 | tier1 | CDS-5UTR | 2482 | NA | 0 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | KIAA0317|DPEP1 | KIAA0317 | DPEP1 | 14 | 16 | -1 | 1 | 6 | 1 | 1 | 4.1 | 75136352 | 89702316 | tier2 | Out-of-frame | 8772 | NA | 0.35049 |
| THCA | TCGA-ET-A2N3-01B | TCGA-ET-A2N3 | ANKRD11|DPEP1 | ANKRD11 | DPEP1 | 16 | 16 | -1 | 1 | 2 | 3 | 2 | 0.013 | 89556653 | 89696713 | tier4 | 5UTR-5UTR | 946 | NA | 0.37832 |
| UCS | TCGA-N5-A4RT-01A | TCGA-N5-A4RT | RHOT2|DPEP1 | RHOT2 | DPEP1 | 16 | 16 | 1 | 1 | 48 | 10 | 8 | 0.045 | 723130 | 89704040 | tier1 | Out-of-frame | 14662 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | SCAF8|IL20RA | SCAF8 | IL20RA | 6 | 6 | 1 | -1 | 55 | 37 | 33 | 0.052 | 155114110 | 137338240 | tier1 | In-frame | 15367 | NA | 0 |
| PRAD | TCGA-KK-A6E2-01A | TCGA-KK-A6E2 | NFIA|CLCA1 | NFIA | CLCA1 | 1 | 1 | 1 | 1 | 3 | 2 | 2 | 0.32 | 61824946 | 86942131 | tier1 | In-frame | 11464 | NA | 0.36361 |
| HNSC | TCGA-CV-7177-01A | TCGA-CV-7177 | PSMD1|ATP2C1 | PSMD1 | ATP2C1 | 2 | 3 | 1 | 1 | 20 | 6 | 6 | 0.17 | 232011070 | 130659474 | tier1 | In-frame | 13720 | NA | 0.35446 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | C21orf56|IGF1 | C21orf56 | IGF1 | 21 | 12 | -1 | -1 | 34 | 17 | 16 | 0.17 | 47604270 | 102813468 | tier1 | 5UTR-CDS | 2656 | NA | 0 |
| SKCM | TCGA-D9-A4Z6-01A | TCGA-D9-A4Z6 | RPL18|SLC38A5 | RPL18 | SLC38A5 | 19 | X | -1 | -1 | 2 | 68 | 1 | 0.36 | 49118590 | 48327824 | tier3 | NA | 14985 | NA | 0 |
| LGG | TCGA-S9-A7R3-01A | TCGA-S9-A7R3 | TCERG1L|CNTN1 | TCERG1L | CNTN1 | 10 | 12 | -1 | 1 | 10 | 10 | 7 | 0.14 | 133106474 | 41302159 | tier1 | CDS-5UTR | 17579 | NA | 0 |
| LUAD | TCGA-80-5611-01A | TCGA-80-5611 | CPNE8|CNTN1 | CPNE8 | CNTN1 | 12 | 12 | -1 | 1 | 3 | 4 | 4 | 0.18 | 39266806 | 41408030 | tier1 | Out-of-frame | 4137 | NA | 0.37534 |
| CESC | TCGA-EA-A3HU-01A | TCGA-EA-A3HU | ACADVL|CD74 | ACADVL | CD74 | 17 | 5 | 1 | -1 | 2 | 2 | 1 | 0.14 | 7120492 | 149792314 | tier4 | CDS-5UTR | 246 | NA | 0.36558 |
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