Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-D1-A3DG-01A | TCGA-D1-A3DG | TRAF3IP2|FYN | TRAF3IP2 | FYN | 6 | 6 | -1 | -1 | 40 | 18 | 16 | 2.3 | 111887647 | 111995833 | tier1 | Out-of-frame | 18554 | NA | 0 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | TMEM200A|FYN | TMEM200A | FYN | 6 | 6 | 1 | -1 | 18 | 31 | 28 | 0.19 | 130687669 | 112101838 | tier1 | 5UTR-5UTR | 18007 | NA | 0 |
| LUSC | TCGA-96-8169-01A | TCGA-96-8169 | PRRC2C|FMO1 | PRRC2C | FMO1 | 1 | 1 | 1 | 1 | 70 | 61 | 57 | 2.8 | 171454874 | 171236682 | tier1 | 5UTR-CDS | 13652 | NA | 0.33359 |
| PRAD | TCGA-TP-A8TV-01A | TCGA-TP-A8TV | POU2F1|FMO1 | POU2F1 | FMO1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 0.32 | 167353188 | 171227221 | tier2 | CDS-5UTR | 13198 | NA | 0.37426 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | CYTH1|MRC2 | CYTH1 | MRC2 | 17 | 17 | -1 | 1 | 47 | 25 | 24 | 0.2 | 76732774 | 60741909 | tier1 | NA | 4513 | NA | 0.37287 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | TANC2|MRC2 | TANC2 | MRC2 | 17 | 17 | 1 | 1 | 5 | 5 | 4 | 0.72 | 61086987 | 60741909 | tier1 | In-frame | 17378 | NA | 0 |
| UCS | TCGA-N5-A4RS-01A | TCGA-N5-A4RS | RNF2|MRC2 | RNF2 | MRC2 | 1 | 17 | 1 | 1 | 4 | 7 | 7 | 0.77 | 185056772 | 60741909 | tier1 | Out-of-frame | 14808 | NA | 0 |
| BRCA | TCGA-AR-A250-01A | TCGA-AR-A250 | PITPNC1|MBTD1 | PITPNC1 | MBTD1 | 17 | 17 | 1 | -1 | 5 | 9 | 6 | 0.4 | 65574373 | 49302570 | tier1 | CDS-5UTR | 12891 | NA | 0.3524 |
| OV | TCGA-24-1557-01A | TCGA-24-1557 | SPAG9|MBTD1 | SPAG9 | MBTD1 | 17 | 17 | -1 | -1 | 4 | 1 | 1 | 0.011 | 49156945 | 49258055 | tier2 | In-frame | 16661 | validated | 0 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | SPAG9|MBTD1 | SPAG9 | MBTD1 | 17 | 17 | -1 | -1 | 18 | 18 | 18 | 0.011 | 49156945 | 49258055 | tier1 | In-frame | 16662 | validated | 0 |
| THYM | TCGA-ZB-A96L-01A | TCGA-ZB-A96L | MON1A|MBTD1 | MON1A | MBTD1 | 3 | 17 | -1 | -1 | 3 | 2 | 2 | 1.7 | 49967042 | 49302570 | tier1 | CDS-5UTR | 10571 | NA | 0.34993 |
| ESCA | TCGA-XP-A8T6-01A | TCGA-XP-A8T6 | ZNF420|DPF1 | ZNF420 | DPF1 | 19 | 19 | 1 | -1 | 13 | 43 | 40 | 3 | 37582023 | 38704396 | tier1 | In-frame | 20491 | NA | 0 |
| STAD | TCGA-HU-8243-01A | TCGA-HU-8243 | GATA6|DPF1 | GATA6 | DPF1 | 18 | 19 | 1 | -1 | 7 | 18 | 15 | 0.31 | 19752240 | 38713348 | tier1 | Out-of-frame | 6971 | NA | 0.3723 |
| BLCA | TCGA-BL-A0C8-01A | TCGA-BL-A0C8 | NVL|LARS2 | NVL | LARS2 | 1 | 3 | -1 | 1 | 6 | 5 | 1 | 0.53 | 224492736 | 45583321 | tier2 | In-frame | 11963 | validated | 0.35746 |
| LUAD | TCGA-78-7147-01A | TCGA-78-7147 | LIMD1|LARS2 | LIMD1 | LARS2 | 3 | 3 | 1 | 1 | 15 | 8 | 6 | 0.045 | 45707209 | 45565489 | tier1 | In-frame | 9346 | NA | 0.36997 |
| LUSC | TCGA-68-8251-01A | TCGA-68-8251 | LIMD1|LARS2 | LIMD1 | LARS2 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 0.045 | 45637779 | 45488383 | tier2 | Out-of-frame | 9345 | NA | 0.36997 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | LIMD1|LARS2 | LIMD1 | LARS2 | 3 | 3 | 1 | 1 | 3 | 5 | 5 | 0.045 | 45637779 | 45557586 | tier1 | In-frame | 9347 | NA | 0.36997 |
| BLCA | TCGA-FD-A43N-01A | TCGA-FD-A43N | MADD|PIK3C2A | MADD | PIK3C2A | 11 | 11 | 1 | -1 | 3 | 2 | 2 | 0.51 | 47333393 | 17158172 | tier1 | In-frame | 9753 | NA | 0.36026 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | ETHE1|PLAUR | ETHE1 | PLAUR | 19 | 19 | -1 | -1 | 5 | 34 | 34 | 0.015 | 44030667 | 44159725 | tier1 | In-frame | 5848 | NA | 0.37464 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | SCAMP2|PLAUR | SCAMP2 | PLAUR | 15 | 19 | -1 | -1 | 23 | 5 | 5 | 0.5 | 75165540 | 44160792 | tier1 | Out-of-frame | 15373 | NA | 0 |
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