Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | ZFP30|CEACAM7 | ZFP30 | CEACAM7 | 19 | 19 | -1 | -1 | 38 | 25 | 14 | 0.033 | 38135511 | 42191152 | tier1 | In-frame | 20270 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | HKR1|CEACAM7 | HKR1 | CEACAM7 | 19 | 19 | 1 | -1 | 4 | 11 | 10 | 3.1 | 37838774 | 42191152 | tier1 | In-frame | 7811 | non-validated | 0.36207 |
| LGG | TCGA-P5-A5EU-01A | TCGA-P5-A5EU | TSHZ3|CEACAM7 | TSHZ3 | CEACAM7 | 19 | 19 | -1 | -1 | 6 | 8 | 8 | 0.13 | 31840086 | 42181431 | tier1 | In-frame | 18776 | NA | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | FTSJ3|SCN4A | FTSJ3 | SCN4A | 17 | 17 | -1 | -1 | 7 | 14 | 10 | 0.007 | 61897439 | 62019353 | tier1 | Out-of-frame | 6817 | NA | 0.35865 |
| BLCA | TCGA-XF-A9ST-01A | TCGA-XF-A9ST | ARMC8|CACNA2D2 | ARMC8 | CACNA2D2 | 3 | 3 | 1 | -1 | 5 | 3 | 3 | 0.27 | 138007962 | 50513630 | tier1 | Out-of-frame | 1417 | NA | 0.34704 |
| BLCA | TCGA-FD-A3SJ-01A | TCGA-FD-A3SJ | RHOA|CACNA2D2 | RHOA | CACNA2D2 | 3 | 3 | -1 | -1 | 29 | 11 | 10 | 0.11 | 49449253 | 50431599 | tier1 | 5UTR-CDS | 14649 | NA | 0 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | SBNO2|CACNA2D2 | SBNO2 | CACNA2D2 | 19 | 3 | -1 | -1 | 12 | 1 | 1 | 0.002 | 1132089 | 50471860 | tier2 | In-frame | 15348 | NA | 0 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | STXBP1|CACNA2D2 | STXBP1 | CACNA2D2 | 9 | 3 | 1 | -1 | 8 | 9 | 7 | 0.77 | 130425632 | 50418557 | tier1 | Out-of-frame | 17144 | NA | 0 |
| LIHC | TCGA-EP-A3RK-01A | TCGA-EP-A3RK | EBNA1BP2|FMO3 | EBNA1BP2 | FMO3 | 1 | 1 | -1 | 1 | 3 | 6 | 5 | 1.3 | 43634610 | 171072926 | tier1 | In-frame | 5253 | non-validated | 0.34602 |
| UCEC | TCGA-BK-A139-02A | TCGA-BK-A139 | PRRC2C|FMO3 | PRRC2C | FMO3 | 1 | 1 | 1 | 1 | 100 | 73 | 65 | 0.22 | 171454874 | 171072926 | tier1 | 5UTR-CDS | 13653 | NA | 0.32969 |
| BRCA | TCGA-D8-A27H-01A | TCGA-D8-A27H | KCTD20|JARID2 | KCTD20 | JARID2 | 6 | 6 | 1 | 1 | 3 | 4 | 4 | 0.33 | 36438034 | 15374348 | tier1 | Out-of-frame | 8618 | validated | 0.36221 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | CDKAL1|JARID2 | CDKAL1 | JARID2 | 6 | 6 | 1 | 1 | 5 | 1 | 1 | 0.67 | 20548936 | 15487538 | tier3 | In-frame | 3452 | NA | 0.36251 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | MXRA8|CDK11A | MXRA8 | CDK11A | 1 | 1 | -1 | -1 | 12 | 30 | 28 | 0.26 | 1293836 | 1654270 | tier1 | CDS-5UTR | 10871 | non-validated | 0.33873 |
| CESC | TCGA-C5-A7CM-01A | TCGA-C5-A7CM | CRCP|ADAM22 | CRCP | ADAM22 | 7 | 7 | 1 | 1 | 2 | 3 | 3 | 0.082 | 65579957 | 87704941 | tier2 | In-frame | 4189 | NA | 0.36181 |
| KIRP | TCGA-B9-4116-01A | TCGA-B9-4116 | ZC3HC1|ADAM22 | ZC3HC1 | ADAM22 | 7 | 7 | -1 | 1 | 14 | 7 | 7 | 8 | 129691061 | 87704941 | tier1 | In-frame | 20160 | validated | 0 |
| ESCA | TCGA-2H-A9GH-01A | TCGA-2H-A9GH | CPNE8|MGST1 | CPNE8 | MGST1 | 12 | 12 | -1 | 1 | 6 | 27 | 24 | 0.047 | 39155914 | 16507165 | tier1 | CDS-5UTR | 4138 | NA | 0.35124 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | MTSS1|ST3GAL1 | MTSS1 | ST3GAL1 | 8 | 8 | -1 | -1 | 50 | 46 | 34 | 4.3 | 125740125 | 134478333 | tier1 | In-frame | 10844 | NA | 0.35307 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | NDRG1|ST3GAL1 | NDRG1 | ST3GAL1 | 8 | 8 | -1 | -1 | 50 | 72 | 68 | 0.27 | 134292475 | 134475702 | tier1 | Out-of-frame | 11283 | NA | 0.34956 |
| CESC | TCGA-VS-A9V0-01A | TCGA-VS-A9V0 | PLXNB2|ST3GAL1 | PLXNB2 | ST3GAL1 | 22 | 8 | -1 | -1 | 19 | 41 | 34 | 0.46 | 50718434 | 134511432 | tier1 | CDS-5UTR | 13074 | NA | 0.36977 |
| KIRC | TCGA-B0-5400-01A | TCGA-B0-5400 | NDRG1|ST3GAL1 | NDRG1 | ST3GAL1 | 8 | 8 | -1 | -1 | 45 | 45 | 25 | 0.27 | 134296492 | 134488843 | tier1 | CDS-5UTR | 11282 | NA | 0.34956 |
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