Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-77-7465-01A | TCGA-77-7465 | GLI3|CROT | GLI3 | CROT | 7 | 7 | -1 | 1 | 17 | 24 | 18 | 3.2 | 42116351 | 86975656 | tier1 | CDS-5UTR | 7102 | NA | 0.37963 |
| SKCM | TCGA-ER-A1A1-06A | TCGA-ER-A1A1 | ZNF791|MLL5 | ZNF791 | MLL5 | 19 | 7 | 1 | 1 | 4 | 1 | 1 | 0.33 | 12721896 | 104714066 | tier3 | Out-of-frame | 20668 | NA | 0 |
| BRCA | TCGA-B6-A0IN-01A | TCGA-B6-A0IN | MED13|ITGA3 | MED13 | ITGA3 | 17 | 17 | -1 | 1 | 9 | 1 | 1 | 0.52 | 60059559 | 48141441 | tier2 | Out-of-frame | 10170 | NA | 0.37002 |
| LUSC | TCGA-60-2706-01A | TCGA-60-2706 | ELL|CRLF1 | ELL | CRLF1 | 19 | 19 | -1 | -1 | 38 | 12 | 12 | 0.26 | 18632731 | 18710656 | tier1 | Out-of-frame | 5513 | NA | 0.36333 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | MLLT1|CRLF1 | MLLT1 | CRLF1 | 19 | 19 | -1 | -1 | 4 | 1 | 1 | 0.29 | 6230581 | 18710656 | tier2 | Out-of-frame | 10501 | NA | 0.36199 |
| HNSC | TCGA-BB-7871-01A | TCGA-BB-7871 | DCAKD|MAP3K14 | DCAKD | MAP3K14 | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 0.096 | 43128921 | 43362316 | tier4 | 5UTR-CDS | 4589 | NA | 0.37556 |
| LGG | TCGA-DB-A4XH-01A | TCGA-DB-A4XH | PLEKHA7|ABCC8 | PLEKHA7 | ABCC8 | 11 | 11 | -1 | -1 | 2 | 1 | 1 | 0.24 | 17035536 | 17485151 | tier2 | Out-of-frame | 13008 | NA | 0.36276 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | CCT2|CACNG3 | CCT2 | CACNG3 | 12 | 16 | 1 | 1 | 381 | 554 | 516 | 0.24 | 69979304 | 24372673 | tier1 | Out-of-frame | 3244 | NA | 0.36818 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | UHRF1BP1L|CACNG3 | UHRF1BP1L | CACNG3 | 12 | 16 | -1 | 1 | 17 | 9 | 9 | 2 | 100536370 | 24372673 | tier1 | Out-of-frame | 19209 | NA | 0 |
| PCPG | TCGA-QR-A6GW-01A | TCGA-QR-A6GW | C16orf57|CX3CL1 | C16orf57 | CX3CL1 | 16 | 16 | 1 | 1 | 6 | 11 | 8 | 0.27 | 58048230 | 57413546 | tier1 | Out-of-frame | 2484 | NA | 0 |
| ACC | TCGA-OR-A5JP-01A | TCGA-OR-A5JP | RECQL5|CACNA1G | RECQL5 | CACNA1G | 17 | 17 | -1 | 1 | 4 | 5 | 5 | 1 | 73654378 | 48667832 | tier1 | In-frame | 14529 | NA | 0 |
| BRCA | TCGA-C8-A1HO-01A | TCGA-C8-A1HO | NF1|CACNA1G | NF1 | CACNA1G | 17 | 17 | 1 | 1 | 4 | 2 | 2 | 0.29 | 29592357 | 48676789 | tier1 | Out-of-frame | 11402 | NA | 0.37322 |
| LUAD | TCGA-69-A59K-01A | TCGA-69-A59K | ZNF585B|CACNA1G | ZNF585B | CACNA1G | 19 | 17 | -1 | 1 | 20 | 16 | 11 | 0.83 | 37697942 | 48652904 | tier1 | In-frame | 20568 | NA | 0 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | LUC7L3|CACNA1G | LUC7L3 | CACNA1G | 17 | 17 | 1 | 1 | 3 | 51 | 47 | 0.57 | 48819092 | 48652904 | tier1 | In-frame | 9686 | NA | 0.34458 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | PPP2CA|CDKL3 | PPP2CA | CDKL3 | 5 | 5 | -1 | -1 | 104 | 27 | 27 | 0.008 | 133561451 | 133640258 | tier1 | In-frame | 13385 | NA | 0.38074 |
| BRCA | TCGA-A1-A0SQ-01A | TCGA-A1-A0SQ | PRKRIR|MARK4 | PRKRIR | MARK4 | 11 | 19 | -1 | 1 | 12 | 91 | 83 | 1.2 | 76072000 | 45767942 | tier1 | Out-of-frame | 13575 | NA | 0.38637 |
| ESCA | TCGA-L5-A4OW-01A | TCGA-L5-A4OW | TTLL6|NOS2 | TTLL6 | NOS2 | 17 | 17 | -1 | -1 | 4 | 27 | 25 | 1.8 | 46862285 | 26116714 | tier1 | Out-of-frame | 18912 | NA | 0 |
| BRCA | TCGA-E2-A1IH-01A | TCGA-E2-A1IH | C20orf177|SLC13A2 | C20orf177 | SLC13A2 | 20 | 17 | 1 | 1 | 2 | 3 | 3 | 1.7 | 58517567 | 26814428 | tier2 | 5UTR-5UTR | 2639 | NA | 0 |
| BRCA | TCGA-AC-A3QQ-01A | TCGA-AC-A3QQ | FAM168A|SLC13A2 | FAM168A | SLC13A2 | 11 | 17 | -1 | 1 | 2 | 4 | 4 | 0.7 | 73308968 | 26816232 | tier2 | 5UTR-CDS | 6089 | NA | 0.34316 |
| UVM | TCGA-VD-AA8M-01A | TCGA-VD-AA8M | ZNF266|MATK | ZNF266 | MATK | 19 | 19 | -1 | -1 | 14 | 14 | 14 | 0.95 | 9544344 | 3784031 | tier1 | 5UTR-CDS | 20427 | NA | 0 |
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