Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AC-A2QH-01A | TCGA-AC-A2QH | ELP4|CFTR | ELP4 | CFTR | 11 | 7 | 1 | 1 | 4 | 5 | 5 | 0.43 | 31616448 | 117170953 | tier1 | In-frame | 5541 | NA | 0.37351 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | NRCAM|CFTR | NRCAM | CFTR | 7 | 7 | -1 | 1 | 25 | 15 | 12 | 0.42 | 108096687 | 117305513 | tier1 | 5UTR-CDS | 11736 | NA | 0.37581 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | PNPLA8|CFTR | PNPLA8 | CFTR | 7 | 7 | -1 | 1 | 13 | 10 | 7 | 0.076 | 108128203 | 117282492 | tier1 | In-frame | 13125 | NA | 0.37433 |
| PRAD | TCGA-YL-A8HM-01A | TCGA-YL-A8HM | ELAVL2|CFTR | ELAVL2 | CFTR | 9 | 7 | -1 | 1 | 15 | 12 | 12 | 0.068 | 23821603 | 117304742 | tier1 | 5UTR-CDS | 5490 | NA | 0.37853 |
| HNSC | TCGA-T2-A6WZ-01A | TCGA-T2-A6WZ | MACROD1|BAD | MACROD1 | BAD | 11 | 11 | -1 | -1 | 10 | 10 | 7 | 0.049 | 63918711 | 64051848 | tier1 | CDS-5UTR | 9737 | NA | 0.36796 |
| SKCM | TCGA-ER-A19T-06A | TCGA-ER-A19T | MACROD1|BAD | MACROD1 | BAD | 11 | 11 | -1 | -1 | 38 | 20 | 20 | 0.049 | 63918711 | 64039275 | tier1 | In-frame | 9736 | validated | 0.36796 |
| SARC | TCGA-DX-A8BR-01A | TCGA-DX-A8BR | OSBPL3|ABP1 | OSBPL3 | ABP1 | 7 | 7 | -1 | 1 | 13 | 5 | 5 | 2.6 | 25019505 | 150549203 | tier1 | 5UTR-5UTR | 12077 | NA | 0.36885 |
| PRAD | TCGA-XJ-A9DI-01A | TCGA-XJ-A9DI | STAU1|CYP26B1 | STAU1 | CYP26B1 | 20 | 2 | -1 | -1 | 3 | 2 | 2 | 0.17 | 47768119 | 72362548 | tier1 | In-frame | 17022 | NA | 0 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | EXOC6B|CASP10 | EXOC6B | CASP10 | 2 | 2 | -1 | 1 | 4 | 2 | 2 | 0.1 | 72562076 | 202072798 | tier1 | In-frame | 5910 | NA | 0.36759 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | SMURF1|CFLAR | SMURF1 | CFLAR | 7 | 2 | -1 | 1 | 11 | 33 | 33 | 0.9 | 98741349 | 201994452 | tier1 | CDS-5UTR | 16442 | NA | 0 |
| BRCA | TCGA-LL-A5YP-01A | TCGA-LL-A5YP | C17orf85|CAMKK1 | C17orf85 | CAMKK1 | 17 | 17 | -1 | -1 | 20 | 5 | 5 | 1.7 | 3746380 | 3783728 | tier1 | 5UTR-CDS | 2534 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | C6orf186|SLC22A16 | C6orf186 | SLC22A16 | 6 | 6 | -1 | -1 | 38 | 16 | 16 | 0.95 | 110620125 | 110778220 | tier1 | Out-of-frame | 2758 | non-validated | 0 |
| LUSC | TCGA-43-A475-01A | TCGA-43-A475 | TAF8|SLC22A16 | TAF8 | SLC22A16 | 6 | 6 | 1 | -1 | 298 | 189 | 159 | 1.6 | 42023752 | 110763978 | tier1 | Out-of-frame | 17354 | NA | 0 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | NF1|ABCB5 | NF1 | ABCB5 | 17 | 7 | 1 | 1 | 8 | 6 | 5 | 2.6 | 29676269 | 20671682 | tier1 | In-frame | 11392 | NA | 0.37336 |
| PRAD | TCGA-KK-A7AY-01A | TCGA-KK-A7AY | FUK|ABCB5 | FUK | ABCB5 | 16 | 7 | 1 | 1 | 2 | 1 | 1 | 0.067 | 70512553 | 20778606 | tier2 | Out-of-frame | 6824 | NA | 0.34425 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | EXOC4|SLC25A13 | EXOC4 | SLC25A13 | 7 | 7 | 1 | -1 | 38 | 29 | 25 | 1.7 | 133059756 | 95776008 | tier1 | In-frame | 5904 | non-validated | 0.35937 |
| LUSC | TCGA-43-7658-01A | TCGA-43-7658 | ART3|SLC25A13 | ART3 | SLC25A13 | 4 | 7 | 1 | -1 | 52 | 49 | 46 | 100 | 76997111 | 95776008 | tier1 | In-frame | 1469 | NA | 0.34414 |
| READ | TCGA-EI-6510-01A | TCGA-EI-6510 | CD2AP|SLC25A13 | CD2AP | SLC25A13 | 6 | 7 | 1 | -1 | 60 | 61 | 55 | 0.014 | 47501491 | 95800836 | tier1 | In-frame | 3267 | NA | 0.38178 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | LUC7L2|SLC25A13 | LUC7L2 | SLC25A13 | 7 | 7 | 1 | -1 | 9 | 1 | 1 | 0.3 | 139026268 | 95906650 | tier3 | In-frame | 9681 | NA | 0.37038 |
| LUAD | TCGA-05-5429-01A | TCGA-05-5429 | SEPT9|MPO | SEPT9 | MPO | 17 | 17 | 1 | -1 | 4 | 5 | 3 | 0.53 | 75303279 | 56353063 | tier1 | 5UTR-CDS | 15613 | non-validated | 0 |
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