TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BLCA	TCGA-E7-A97Q-01A	TCGA-E7-A97Q	PSMB3\|RP11-723O4.6	PSMB3	RP11-723O4.6	17	3	1	-1	57	29	28	0.74	36909587	128629176	tier1	Out-of-frame	13714	NA	0.35752
BRCA	TCGA-E9-A22D-01A	TCGA-E9-A22D	ACACA\|ACCN1	ACACA	ACCN1	17	17	-1	-1	9	15	13	0.031	35614625	31344702	tier1	Out-of-frame	222	NA	0.37083
STAD	TCGA-BR-8483-01A	TCGA-BR-8483	ACACA\|RARA	ACACA	RARA	17	17	-1	1	365	1472	1404	0.11	35687113	38487109	tier1	CDS-5UTR	232	NA	0.3833
LUAD	TCGA-44-2656-01A	TCGA-44-2656	ACACA\|SSH2	ACACA	SSH2	17	17	-1	-1	2	1	1	3.6	35631084	27982625	tier2	In-frame	234	non-validated	0.37149
BLCA	TCGA-FJ-A3ZE-01A	TCGA-FJ-A3ZE	ACACA\|ADAM9	ACACA	ADAM9	17	8	-1	1	5	7	3	1.5	35687113	38865405	tier1	Out-of-frame	223	NA	0.3807
BLCA	TCGA-FJ-A3ZE-01A	TCGA-FJ-A3ZE	ACACA\|HTRA4	ACACA	HTRA4	17	8	-1	1	133	141	135	0.79	35687113	38845455	tier1	In-frame	228	NA	0.37278
PRAD	TCGA-V1-A8ML-01A	TCGA-V1-A8ML	ACACA\|MMP28	ACACA	MMP28	17	17	-1	-1	18	20	18	0.93	35454765	34106327	tier1	In-frame	231	NA	0.36868
BLCA	TCGA-DK-A2I2-01A	TCGA-DK-A2I2	ACACA\|TADA2A	ACACA	TADA2A	17	17	-1	1	6	7	7	2.9	35766352	35783609	tier1	Out-of-frame	235	NA	0.36336
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	ACACA\|TANC2	ACACA	TANC2	17	17	-1	1	2	5	2	0.03	35454765	61345109	tier2	Out-of-frame	236	NA	0.37112
COAD	TCGA-D5-6929-01A	TCGA-D5-6929	ACACA\|GSDMB	ACACA	GSDMB	17	17	-1	-1	11	4	2	2.1	35627642	38068750	tier1	Out-of-frame	227	NA	0.36552
ESCA	TCGA-L5-A4OQ-01A	TCGA-L5-A4OQ	ACACA\|LASP1	ACACA	LASP1	17	17	-1	1	14	95	89	1.5	35536201	37034339	tier1	In-frame	229	NA	0.37513
LUAD	TCGA-69-7979-01A	TCGA-69-7979	ACACA\|SRCIN1	ACACA	SRCIN1	17	17	-1	-1	3	5	5	0.22	35468466	36735044	tier1	In-frame	233	NA	0.36336
READ	TCGA-AG-3902-01A	TCGA-AG-3902	ACACA\|MED1	ACACA	MED1	17	17	-1	-1	6	2	2	2.2	35766352	37588269	tier1	In-frame	230	NA	0.37037
SARC	TCGA-3B-A9HS-01A	TCGA-3B-A9HS	ACACA\|C12orf26	ACACA	C12orf26	17	12	-1	1	48	46	38	0.79	35715942	82871060	tier1	5UTR-CDS	224	NA	0
SARC	TCGA-3B-A9HS-01A	TCGA-3B-A9HS	ACACA\|GLIPR1L2	ACACA	GLIPR1L2	17	12	-1	1	222	141	139	3.5	35687113	75816684	tier1	In-frame	226	NA	0.36909
THCA	TCGA-EM-A1YC-01A	TCGA-EM-A1YC	ACACA\|C20orf72	ACACA	C20orf72	17	20	-1	1	3	1	1	0.89	35766352	17968809	tier4	In-frame	225	NA	0
ESCA	TCGA-L5-A891-01A	TCGA-L5-A891	WASF2\|FGR	WASF2	FGR	1	1	-1	-1	2	23	21	0.55	27816497	27951662	tier2	5UTR-5UTR	19732	non-validated	0
LUSC	TCGA-66-2759-01A	TCGA-66-2759	WASF2\|FGR	WASF2	FGR	1	1	-1	-1	45	4	4	0.55	27816497	27951662	tier1	5UTR-5UTR	19730	non-validated	0
SKCM	TCGA-ER-A19W-06A	TCGA-ER-A19W	WASF2\|FGR	WASF2	FGR	1	1	-1	-1	29	8	7	0.55	27816497	27951662	tier1	5UTR-5UTR	19731	NA	0
UCS	TCGA-NA-A4R1-01A	TCGA-NA-A4R1	WASF2\|FGR	WASF2	FGR	1	1	-1	-1	97	31	27	0.55	27816497	27951662	tier1	5UTR-5UTR	19733	NA	0

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