Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | DPP3|FKBP2 | DPP3 | FKBP2 | 11 | 11 | 1 | 1 | 122 | 71 | 63 | 0.009 | 66272245 | 64011313 | tier1 | In-frame | 5079 | NA | 0.35901 |
| BLCA | TCGA-E7-A85H-01A | TCGA-E7-A85H | DPP3|SPATA6 | DPP3 | SPATA6 | 11 | 1 | 1 | -1 | 2 | 7 | 7 | 0.045 | 66261104 | 48918803 | tier2 | In-frame | 5081 | NA | 0.35141 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | DPP3|PACS1 | DPP3 | PACS1 | 11 | 11 | 1 | 1 | 17 | 15 | 13 | 1.7 | 66264948 | 65998019 | tier1 | In-frame | 5080 | validated | 0.36304 |
| SARC | TCGA-DX-A7EU-01A | TCGA-DX-A7EU | DPP3|FAM163A | DPP3 | FAM163A | 11 | 1 | 1 | 1 | 3 | 4 | 4 | 1.1 | 66249941 | 179776933 | tier1 | CDS-5UTR | 5078 | NA | 0.34832 |
| COAD | TCGA-AA-3495-01A | TCGA-AA-3495 | CTSO|NAA15 | CTSO | NAA15 | 4 | 4 | -1 | 1 | 6 | 7 | 6 | 2.3 | 156849488 | 140305986 | tier1 | In-frame | 4407 | NA | 0.3285 |
| LIHC | TCGA-BC-A10W-01A | TCGA-BC-A10W | HP|EEA1 | HP | EEA1 | 16 | 12 | 1 | -1 | 2 | 13 | 10 | 0.5 | 72094953 | 93229203 | tier3 | NA | 7944 | NA | 0.37504 |
| SKCM | TCGA-EE-A2M7-06A | TCGA-EE-A2M7 | RP11-1220K2.2|TTC26 | RP11-1220K2.2 | TTC26 | 7 | 7 | 1 | 1 | 12 | 10 | 7 | 0.007 | 141859143 | 138849878 | tier1 | NA | 14914 | NA | 0 |
| LIHC | TCGA-PD-A5DF-01A | TCGA-PD-A5DF | RP11-124D2.2|C14orf164 | RP11-124D2.2 | C14orf164 | 14 | 14 | 1 | 1 | 11 | 5 | 5 | 0.98 | 23777408 | 23729093 | tier1 | Out-of-frame | 14916 | non-validated | 0 |
| LUSC | TCGA-18-3412-01A | TCGA-18-3412 | GAN|GRM7 | GAN | GRM7 | 16 | 3 | 1 | 1 | 4 | 1 | 1 | 0.71 | 81348885 | 7188139 | tier4 | Out-of-frame | 6944 | NA | 0.37761 |
| KIRC | TCGA-BP-4787-01A | TCGA-BP-4787 | IKBKE|ACSM1 | IKBKE | ACSM1 | 1 | 16 | 1 | -1 | 6 | 3 | 3 | 0.87 | 206667324 | 20651906 | tier1 | In-frame | 8148 | NA | 0.37655 |
| PRAD | TCGA-HC-8262-01A | TCGA-HC-8262 | MSMB|SUPT16H | MSMB | SUPT16H | 10 | 14 | 1 | -1 | 2 | 325 | 291 | 100 | 51562517 | 21829491 | tier4 | 3UTR-CDS | 10744 | NA | 0.3708 |
| PRAD | TCGA-HC-8260-01A | TCGA-HC-8260 | MSMB|ANXA1 | MSMB | ANXA1 | 10 | 9 | 1 | 1 | 2 | 168 | 126 | 100 | 51562511 | 75772570 | tier3 | 3UTR-5UTR | 10741 | NA | 0.3726 |
| PRAD | TCGA-J4-A67O-01A | TCGA-J4-A67O | MSMB|KLK3 | MSMB | KLK3 | 10 | 19 | 1 | 1 | 3 | 275 | 3 | 0.13 | 51562517 | 51361285 | tier1 | 3UTR-CDS | 10742 | NA | 0.35484 |
| PRAD | TCGA-J9-A52B-01A | TCGA-J9-A52B | MSMB|KLK3 | MSMB | KLK3 | 10 | 19 | 1 | 1 | 3 | 222 | 6 | 0.13 | 51562517 | 51361285 | tier1 | 3UTR-CDS | 10743 | NA | 0.35484 |
| ESCA | TCGA-V5-A7RE-01A | TCGA-V5-A7RE | STRADA|GRB2 | STRADA | GRB2 | 17 | 17 | -1 | -1 | 3 | 28 | 27 | 0.37 | 61790766 | 73328878 | tier1 | In-frame | 17099 | NA | 0 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | S1PR2|RAVER1 | S1PR2 | RAVER1 | 19 | 19 | -1 | -1 | 9 | 13 | 12 | 0.46 | 10341880 | 10429916 | tier1 | 5UTR-CDS | 15254 | NA | 0 |
| HNSC | TCGA-CV-6953-01A | TCGA-CV-6953 | IKBKG|GAB3 | IKBKG | GAB3 | X | X | 1 | -1 | 13 | 5 | 4 | 0.022 | 153775960 | 153944604 | tier1 | 5UTR-CDS | 8149 | NA | 0.38348 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | EGLN2|PLD3 | EGLN2 | PLD3 | 19 | 19 | 1 | 1 | 44 | 30 | 25 | 0.17 | 41307320 | 40877580 | tier1 | In-frame | 5388 | non-validated | 0.35327 |
| BRCA | TCGA-AN-A049-01A | TCGA-AN-A049 | TAF15|AP2B1 | TAF15 | AP2B1 | 17 | 17 | 1 | 1 | 49 | 62 | 58 | 1.5 | 34151202 | 33966614 | tier1 | In-frame | 17317 | NA | 0 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | TAF15|MAN1A2 | TAF15 | MAN1A2 | 17 | 1 | 1 | 1 | 19 | 16 | 12 | 0.19 | 34169463 | 118035769 | tier1 | In-frame | 17318 | validated | 0 |
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