Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-2Y-A9H9-01A | TCGA-2Y-A9H9 | CFB|SERPINA1 | CFB | SERPINA1 | 6 | 14 | 1 | -1 | 4 | 1 | 1 | 0.14 | 31919830 | 94857030 | tier3 | NA | 3584 | NA | 0.36598 |
| LIHC | TCGA-DD-A73G-01A | TCGA-DD-A73G | CFB|SERPINA1 | CFB | SERPINA1 | 6 | 14 | 1 | -1 | 4 | 3 | 2 | 0.14 | 31919830 | 94857030 | tier1 | NA | 3585 | NA | 0.36598 |
| LIHC | TCGA-DD-AADK-01A | TCGA-DD-AADK | CFB|SERPINA1 | CFB | SERPINA1 | 6 | 14 | 1 | -1 | 14 | 1 | 1 | 0.14 | 31919830 | 94857030 | tier3 | NA | 3586 | NA | 0.36598 |
| LIHC | TCGA-G3-A25Z-01A | TCGA-G3-A25Z | CFB|SERPINA1 | CFB | SERPINA1 | 6 | 14 | 1 | -1 | 10 | 1 | 1 | 0.14 | 31919830 | 94857030 | tier3 | NA | 3587 | NA | 0.36598 |
| LIHC | TCGA-GJ-A6C0-01A | TCGA-GJ-A6C0 | CFB|SERPINA1 | CFB | SERPINA1 | 6 | 14 | 1 | -1 | 4 | 1 | 1 | 0.14 | 31919830 | 94857030 | tier3 | NA | 3588 | NA | 0.36598 |
| CHOL | TCGA-W5-AA36-01A | TCGA-W5-AA36 | CFB|NDUFV1 | CFB | NDUFV1 | 6 | 11 | 1 | 1 | 2 | 23 | 17 | 0.76 | 31919861 | 67375697 | tier3 | NA | 3583 | NA | 0.36729 |
| LIHC | TCGA-EP-A3JL-01A | TCGA-EP-A3JL | CFB|CCT5 | CFB | CCT5 | 6 | 5 | 1 | 1 | 2 | 71 | 57 | 1.8 | 31919861 | 10250033 | tier3 | 3UTR-5UTR | 3582 | NA | 0.37705 |
| BLCA | TCGA-BL-A0C8-01A | TCGA-BL-A0C8 | TWF2|FSTL4 | TWF2 | FSTL4 | 3 | 5 | -1 | -1 | 10 | 7 | 7 | 1.1 | 52273008 | 132569229 | tier1 | Out-of-frame | 18973 | non-validated | 0 |
| CESC | TCGA-EK-A2PG-01A | TCGA-EK-A2PG | TWF2|WDR82 | TWF2 | WDR82 | 3 | 3 | -1 | -1 | 16 | 12 | 12 | 3 | 52273008 | 52291535 | tier1 | Out-of-frame | 18974 | NA | 0 |
| UCS | TCGA-N8-A4PI-01A | TCGA-N8-A4PI | TWF2|ALAS1 | TWF2 | ALAS1 | 3 | 3 | -1 | 1 | 18 | 10 | 9 | 0.49 | 52273008 | 52242099 | tier1 | In-frame | 18972 | NA | 0 |
| BRCA | TCGA-BH-A1F0-01A | TCGA-BH-A1F0 | SEPP1|EIF2AK2 | SEPP1 | EIF2AK2 | 5 | 2 | -1 | -1 | 2 | 26 | 22 | 0.066 | 42799982 | 37342384 | tier3 | NA | 15591 | NA | 0 |
| KICH | TCGA-KN-8432-01A | TCGA-KN-8432 | SEPP1|C7 | SEPP1 | C7 | 5 | 5 | -1 | 1 | 2 | 64 | 44 | 1.2 | 42799982 | 40954982 | tier3 | NA | 15590 | non-validated | 0 |
| LIHC | TCGA-BC-A10X-01A | TCGA-BC-A10X | SEPP1|C16orf45 | SEPP1 | C16orf45 | 5 | 16 | -1 | 1 | 2 | 24 | 2 | 0.62 | 42799982 | 15675074 | tier3 | 3UTR-CDS | 15589 | NA | 0 |
| PCPG | TCGA-QT-A5XO-01A | TCGA-QT-A5XO | PRKDC|CA3 | PRKDC | CA3 | 8 | 8 | -1 | 1 | 3 | 1 | 1 | 0.006 | 48769717 | 86351941 | tier2 | Out-of-frame | 13567 | NA | 0.37721 |
| BRCA | TCGA-AN-A0FD-01A | TCGA-AN-A0FD | PRKDC|CEP290 | PRKDC | CEP290 | 8 | 12 | -1 | -1 | 3 | 2 | 2 | 0.09 | 48744375 | 88533341 | tier1 | In-frame | 13568 | NA | 0.37674 |
| COAD | TCGA-RU-A8FL-01A | TCGA-RU-A8FL | PRKDC|CLVS1 | PRKDC | CLVS1 | 8 | 8 | -1 | 1 | 7 | 4 | 3 | 0.5 | 48824970 | 62212236 | tier1 | CDS-5UTR | 13569 | NA | 0.37543 |
| LUAD | TCGA-86-7713-01A | TCGA-86-7713 | PRKDC|MYO5A | PRKDC | MYO5A | 8 | 15 | -1 | -1 | 4 | 7 | 7 | 0.14 | 48730011 | 52667657 | tier4 | In-frame | 13570 | NA | 0.38354 |
| PRAD | TCGA-KK-A8IB-01A | TCGA-KK-A8IB | PRKDC|UBE2V2 | PRKDC | UBE2V2 | 8 | 8 | -1 | 1 | 8 | 5 | 3 | 0.5 | 48866180 | 48955593 | tier1 | In-frame | 13571 | NA | 0.37967 |
| HNSC | TCGA-CN-6997-01A | TCGA-CN-6997 | LYN|NTRK3 | LYN | NTRK3 | 8 | 15 | 1 | -1 | 95 | 77 | 69 | 0.051 | 56866543 | 88576276 | tier1 | In-frame | 9696 | NA | 0.39375 |
| COAD | TCGA-A6-5666-01A | TCGA-A6-5666 | LYN|VPS13B | LYN | VPS13B | 8 | 8 | 1 | 1 | 6 | 2 | 2 | 0.44 | 56792662 | 100513915 | tier1 | 5UTR-CDS | 9697 | NA | 0.38916 |
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