Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-7816-01A | TCGA-55-7816 | AQP1|CFB | AQP1 | CFB | 7 | 6 | 1 | 1 | 2 | 2 | 2 | 0.38 | 30965131 | 31913427 | tier3 | NA | 1166 | NA | 0.37306 |
| KIRP | TCGA-BQ-7051-01A | TCGA-BQ-7051 | AQP1|ARFGEF2 | AQP1 | ARFGEF2 | 7 | 20 | 1 | 1 | 2 | 5 | 5 | 0.87 | 30965131 | 47615777 | tier3 | 3UTR-CDS | 1165 | NA | 0.36799 |
| BRCA | TCGA-AN-A0AT-01A | TCGA-AN-A0AT | CD302|ALPL | CD302 | ALPL | 2 | 1 | -1 | 1 | 18 | 10 | 8 | 0.34 | 160634449 | 21880471 | tier1 | CDS-5UTR | 3271 | validated | 0.347 |
| ESCA | TCGA-LN-A4A2-01A | TCGA-LN-A4A2 | PI4KA|SNAP29 | PI4KA | SNAP29 | 22 | 22 | -1 | 1 | 9 | 108 | 100 | 1 | 21212858 | 21224625 | tier1 | 5UTR-CDS | 12785 | NA | 0.36974 |
| BRCA | TCGA-C8-A12W-01A | TCGA-C8-A12W | PI4KA|FAM19A5 | PI4KA | FAM19A5 | 22 | 22 | -1 | 1 | 8 | 7 | 7 | 0.18 | 21147481 | 49103529 | tier1 | Out-of-frame | 12782 | NA | 0.36142 |
| LUAD | TCGA-05-4434-01A | TCGA-05-4434 | PI4KA|ZNF274 | PI4KA | ZNF274 | 22 | 19 | -1 | 1 | 5 | 6 | 6 | 0.056 | 21101871 | 58718087 | tier1 | Out-of-frame | 12786 | NA | 0.37266 |
| LUSC | TCGA-77-6842-01A | TCGA-77-6842 | PI4KA|PRODH | PI4KA | PRODH | 22 | 22 | -1 | -1 | 4 | 2 | 2 | 2.5 | 21212858 | 18913235 | tier1 | 5UTR-CDS | 12783 | NA | 0.36083 |
| LUSC | TCGA-21-1081-01A | TCGA-21-1081 | PI4KA|RREB1 | PI4KA | RREB1 | 22 | 6 | -1 | 1 | 22 | 24 | 22 | 0.17 | 21188850 | 7211037 | tier1 | Out-of-frame | 12784 | NA | 0.37326 |
| PRAD | TCGA-VP-A87J-01A | TCGA-VP-A87J | PI4KA|FAM175A | PI4KA | FAM175A | 22 | 4 | -1 | -1 | 4 | 12 | 10 | 2.4 | 21147481 | 84403397 | tier1 | In-frame | 12781 | NA | 0.36175 |
| SKCM | TCGA-DA-A1I8-06A | TCGA-DA-A1I8 | PI4KA|CLTCL1 | PI4KA | CLTCL1 | 22 | 22 | -1 | -1 | 7 | 2 | 2 | 0.031 | 21188850 | 19230459 | tier1 | Out-of-frame | 12779 | non-validated | 0.36357 |
| UCS | TCGA-NA-A4QY-01A | TCGA-NA-A4QY | PI4KA|DEPDC5 | PI4KA | DEPDC5 | 22 | 22 | -1 | 1 | 5 | 1 | 1 | 1.3 | 21101871 | 32234671 | tier3 | Out-of-frame | 12780 | NA | 0.36331 |
| LIHC | TCGA-DD-A4NP-01A | TCGA-DD-A4NP | UGT1A3|FGG | UGT1A3 | FGG | 2 | 4 | 1 | -1 | 5 | 5 | 1 | 0.51 | 234681945 | 155534001 | tier3 | 3UTR-5UTR | 19200 | NA | 0 |
| KIRC | TCGA-A3-3382-01A | TCGA-A3-3382 | UGT1A3|CCT5 | UGT1A3 | CCT5 | 2 | 5 | 1 | 1 | 2 | 3 | 3 | 3.8 | 234681945 | 10250033 | tier3 | 3UTR-5UTR | 19199 | NA | 0 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | MICAL3|SLC25A18 | MICAL3 | SLC25A18 | 22 | 22 | -1 | 1 | 10 | 1 | 1 | 0.1 | 18507047 | 18069902 | tier2 | 5UTR-CDS | 10344 | NA | 0.3585 |
| PRAD | TCGA-EJ-7315-01A | TCGA-EJ-7315 | MICAL3|ATAD1 | MICAL3 | ATAD1 | 22 | 10 | -1 | -1 | 5 | 2 | 1 | 0.79 | 18507047 | 89574369 | tier2 | 5UTR-5UTR | 10343 | NA | 0.36031 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | EFNA4|C20orf96 | EFNA4 | C20orf96 | 1 | 20 | 1 | -1 | 7 | 4 | 3 | 0.24 | 155039916 | 264722 | tier1 | In-frame | 5355 | non-validated | 0 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | EFNA4|FLAD1 | EFNA4 | FLAD1 | 1 | 1 | 1 | 1 | 5 | 3 | 2 | 0.41 | 155039916 | 154960581 | tier1 | Out-of-frame | 5357 | NA | 0.36692 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | EFNA4|FLAD1 | EFNA4 | FLAD1 | 1 | 1 | 1 | 1 | 4 | 6 | 5 | 0.41 | 155039916 | 154965189 | tier1 | Out-of-frame | 5356 | NA | 0.36692 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | TNFRSF6B|CD74 | TNFRSF6B | CD74 | 20 | 5 | 1 | -1 | 2 | 1 | 1 | 0.007 | 62322300 | 149792314 | tier4 | 5UTR-5UTR | 18342 | NA | 0 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | CFB|STAT6 | CFB | STAT6 | 6 | 12 | 1 | -1 | 2 | 100 | 76 | 0.56 | 31919861 | 57496773 | tier3 | NA | 3589 | NA | 0.38092 |
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