TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-22-1016-01A	TCGA-22-1016	SLC12A8\|BCAS1	SLC12A8	BCAS1	3	20	-1	-1	14	11	10	0.22	124854513	52591969	tier1	Out-of-frame	16020	validated	0
UCEC	TCGA-AJ-A3IA-01A	TCGA-AJ-A3IA	SLC26A6\|CYP2C8	SLC26A6	CYP2C8	3	10	-1	-1	16	11	11	0.69	48672804	96798795	tier1	Out-of-frame	16121	NA	0
LIHC	TCGA-DD-A4NB-01A	TCGA-DD-A4NB	ORM2\|ATP5G3	ORM2	ATP5G3	9	2	1	-1	2	64	18	0.66	117095532	176049335	tier3	3UTR-5UTR	12052	non-validated	0.34416
PAAD	TCGA-IB-7654-01A	TCGA-IB-7654	HLA-DPA1\|SQSTM1	HLA-DPA1	SQSTM1	6	5	-1	1	2	27	7	0.63	33032794	179250858	tier3	3UTR-CDS	7834	NA	0.37917
SKCM	TCGA-ER-A1A1-06A	TCGA-ER-A1A1	HLA-DPA1\|TRIP12	HLA-DPA1	TRIP12	6	2	-1	-1	2	43	24	0.39	33032794	230662547	tier4	3UTR-CDS	7835	NA	0.36355
BLCA	TCGA-GC-A3WC-01A	TCGA-GC-A3WC	HLA-B\|EIF2AK2	HLA-B	EIF2AK2	6	2	-1	-1	2	48	27	0.55	31321649	37342384	tier4	NA	7821	NA	0.38827
KIRC	TCGA-AK-3444-01A	TCGA-AK-3444	HLA-B\|CLCN3	HLA-B	CLCN3	6	4	-1	1	2	10	2	1.3	31321649	170623929	tier3	NA	7820	NA	0.37471
MESO	TCGA-ZN-A9VO-01A	TCGA-ZN-A9VO	HLA-B\|CFB	HLA-B	CFB	6	6	-1	1	4	1	1	0.061	31321649	31913427	tier3	NA	7819	NA	0.37806
BRCA	TCGA-BH-A1FE-06A	TCGA-BH-A1FE	HLA-B\|SNW1	HLA-B	SNW1	6	14	-1	-1	2	9	6	0.41	31321649	78189203	tier4	3UTR-CDS	7824	NA	0.37595
BRCA	TCGA-S3-AA0Z-01A	TCGA-S3-AA0Z	HLA-B\|UBR5	HLA-B	UBR5	6	8	-1	-1	2	1	1	6.9	31321759	103354894	tier3	3UTR-CDS	7825	NA	0.38496
CESC	TCGA-LP-A5U3-01A	TCGA-LP-A5U3	HLA-B\|CCT5	HLA-B	CCT5	6	5	-1	1	2	55	17	2.5	31321649	10250033	tier3	3UTR-5UTR	7818	NA	0.37757
KIRC	TCGA-B0-5706-01A	TCGA-B0-5706	HLA-B\|CCT5	HLA-B	CCT5	6	5	-1	1	2	12	5	2.5	31321649	10250033	tier3	3UTR-5UTR	7816	NA	0.37757
KIRC	TCGA-CZ-5455-01A	TCGA-CZ-5455	HLA-B\|CCT5	HLA-B	CCT5	6	5	-1	1	2	4	1	2.5	31321649	10250033	tier3	3UTR-5UTR	7817	NA	0.37757
THCA	TCGA-GE-A2C6-01A	TCGA-GE-A2C6	HLA-B\|RNASEH2B	HLA-B	RNASEH2B	6	13	-1	1	2	18	12	100	31321649	51530588	tier4	3UTR-CDS	7823	NA	0.37103
UCEC	TCGA-AX-A3G3-01A	TCGA-AX-A3G3	HLA-B\|CBS	HLA-B	CBS	6	21	-1	-1	2	87	57	0.5	31321649	44476011	tier3	NA	7815	NA	0.37362
UVM	TCGA-V4-A9EH-01A	TCGA-V4-A9EH	HLA-B\|IQCE	HLA-B	IQCE	6	7	-1	1	2	29	13	0.031	31321649	2641075	tier4	3UTR-CDS	7822	NA	0.37516
PRAD	TCGA-EJ-7782-01A	TCGA-EJ-7782	TXNDC5\|RREB1	TXNDC5	RREB1	6	6	-1	1	14	5	5	3.3	7895339	7176888	tier1	CDS-5UTR	18989	NA	0
SARC	TCGA-DX-A3M1-01A	TCGA-DX-A3M1	TNFRSF13B\|MPRIP	TNFRSF13B	MPRIP	17	17	-1	1	19	16	15	0.24	16852052	16960950	tier1	Out-of-frame	18338	non-validated	0
LGG	TCGA-HT-A5RC-01A	TCGA-HT-A5RC	AQP1\|CHI3L2	AQP1	CHI3L2	7	1	1	1	2	35	26	0.74	30965131	111772314	tier3	3UTR-5UTR	1167	NA	0.36268
BRCA	TCGA-A2-A3XY-01A	TCGA-A2-A3XY	AQP1\|TYK2	AQP1	TYK2	7	19	1	-1	2	17	15	0.12	30965131	10491352	tier3	3UTR-5UTR	1168	NA	0.37662

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