Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N8-A4PQ-01A | TCGA-N8-A4PQ | TMX2|MED19 | TMX2 | MED19 | 11 | 11 | 1 | -1 | 26 | 13 | 12 | 0.3 | 57480279 | 57472701 | tier1 | Out-of-frame | 18324 | NA | 0 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | HEXA|BBS4 | HEXA | BBS4 | 15 | 15 | -1 | 1 | 535 | 306 | 284 | 0.069 | 72668061 | 72987518 | tier2 | Out-of-frame | 7725 | NA | 0.36266 |
| BRCA | TCGA-E2-A14P-01A | TCGA-E2-A14P | CSNK1E|DNAL4 | CSNK1E | DNAL4 | 22 | 22 | -1 | -1 | 5 | 11 | 10 | 0.012 | 38776375 | 39178875 | tier1 | 5UTR-5UTR | 4287 | non-validated | 0.38079 |
| OV | TCGA-36-1574-01A | TCGA-36-1574 | CSNK1E|KDELR3 | CSNK1E | KDELR3 | 22 | 22 | -1 | 1 | 4 | 2 | 2 | 2.1 | 38776375 | 38870528 | tier1 | 5UTR-CDS | 4288 | non-validated | 0.37946 |
| PAAD | TCGA-HZ-8005-01A | TCGA-HZ-8005 | CSNK1E|MB | CSNK1E | MB | 22 | 22 | -1 | -1 | 3 | 19 | 18 | 0.01 | 38794443 | 36033255 | tier1 | NA | 4289 | NA | 0.3796 |
| SKCM | TCGA-EE-A2ME-06A | TCGA-EE-A2ME | CSNK1E|PHF5A | CSNK1E | PHF5A | 22 | 22 | -1 | -1 | 56 | 54 | 48 | 0.37 | 38710087 | 41864151 | tier1 | In-frame | 4290 | NA | 0.38061 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | CSNK1E|DMC1 | CSNK1E | DMC1 | 22 | 22 | -1 | -1 | 28 | 17 | 17 | 0.82 | 38694791 | 38958374 | tier1 | In-frame | 4286 | NA | 0.38259 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | GANC|RORA | GANC | RORA | 15 | 15 | 1 | -1 | 4 | 7 | 3 | 0.003 | 42618622 | 60789818 | tier1 | Out-of-frame | 6948 | NA | 0.3726 |
| BLCA | TCGA-XF-AAML-01A | TCGA-XF-AAML | PPME1|KANK1 | PPME1 | KANK1 | 11 | 9 | 1 | 1 | 5 | 6 | 6 | 0.66 | 73882567 | 676890 | tier1 | CDS-5UTR | 13329 | NA | 0.35184 |
| BLCA | TCGA-E7-A85H-01A | TCGA-E7-A85H | PPME1|YIF1A | PPME1 | YIF1A | 11 | 11 | 1 | -1 | 5 | 7 | 7 | 100 | 73915490 | 66055147 | tier1 | In-frame | 13332 | NA | 0.33976 |
| BRCA | TCGA-AN-A0AS-01A | TCGA-AN-A0AS | PPME1|NARS2 | PPME1 | NARS2 | 11 | 11 | 1 | -1 | 12 | 3 | 3 | 0.24 | 73915490 | 78239982 | tier1 | In-frame | 13330 | NA | 0.34076 |
| SKCM | TCGA-EB-A41B-01A | TCGA-EB-A41B | PPME1|UVRAG | PPME1 | UVRAG | 11 | 11 | 1 | 1 | 8 | 5 | 3 | 0.003 | 73965748 | 75694431 | tier1 | 3UTR-CDS | 13331 | NA | 0.344 |
| LUSC | TCGA-66-2782-01A | TCGA-66-2782 | NPEPL1|DSN1 | NPEPL1 | DSN1 | 20 | 20 | 1 | -1 | 3 | 3 | 3 | 0.21 | 57269648 | 35384232 | tier1 | Out-of-frame | 11689 | NA | 0.36121 |
| SKCM | TCGA-D9-A4Z5-01A | TCGA-D9-A4Z5 | FAM19A5|C14orf49 | FAM19A5 | C14orf49 | 22 | 14 | 1 | -1 | 7 | 15 | 13 | 0.007 | 49042558 | 95906412 | tier1 | Out-of-frame | 6155 | NA | 0 |
| SKCM | TCGA-BF-A5EQ-01A | TCGA-BF-A5EQ | FAM19A5|ZFP2 | FAM19A5 | ZFP2 | 22 | 5 | 1 | 1 | 6 | 2 | 2 | 0.065 | 49103656 | 178339585 | tier1 | CDS-5UTR | 6157 | NA | 0.35581 |
| THYM | TCGA-5K-AAAP-01A | TCGA-5K-AAAP | FAM19A5|TBC1D22A | FAM19A5 | TBC1D22A | 22 | 22 | 1 | 1 | 16 | 16 | 13 | 0.029 | 49042558 | 47274549 | tier1 | In-frame | 6156 | NA | 0.34048 |
| UCEC | TCGA-2E-A9G8-01A | TCGA-2E-A9G8 | SLC12A8|SLC41A3 | SLC12A8 | SLC41A3 | 3 | 3 | -1 | -1 | 11 | 1 | 1 | 1 | 124996570 | 125745322 | tier2 | In-frame | 16023 | NA | 0 |
| BRCA | TCGA-D8-A1XR-01A | TCGA-D8-A1XR | SLC12A8|BFSP2 | SLC12A8 | BFSP2 | 3 | 3 | -1 | 1 | 89 | 53 | 53 | 0.19 | 124930143 | 133169147 | tier1 | In-frame | 16021 | NA | 0 |
| BRCA | TCGA-AO-A12C-01A | TCGA-AO-A12C | SLC12A8|TMEM131 | SLC12A8 | TMEM131 | 3 | 2 | -1 | -1 | 2 | 1 | 1 | 0.82 | 124930143 | 98543950 | tier3 | Out-of-frame | 16024 | NA | 0 |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | SLC12A8|OSBPL11 | SLC12A8 | OSBPL11 | 3 | 3 | -1 | -1 | 2 | 2 | 2 | 0.15 | 124996570 | 125257477 | tier2 | Out-of-frame | 16022 | NA | 0 |
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