Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A04P-01A | TCGA-A2-A04P | PDE7A|KIAA1217 | PDE7A | KIAA1217 | 8 | 10 | -1 | 1 | 5 | 1 | 1 | 0.29 | 66753606 | 24721924 | tier2 | Out-of-frame | 12508 | non-validated | 0.35521 |
| BRCA | TCGA-AN-A0XV-01A | TCGA-AN-A0XV | PDE7A|NKAIN3 | PDE7A | NKAIN3 | 8 | 8 | -1 | 1 | 19 | 7 | 5 | 0.074 | 66753606 | 63492098 | tier1 | In-frame | 12510 | NA | 0.34245 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | PDE7A|PREX2 | PDE7A | PREX2 | 8 | 8 | -1 | 1 | 16 | 13 | 13 | 1.4 | 66647029 | 68950394 | tier1 | In-frame | 12512 | NA | 0.35287 |
| BRCA | TCGA-A2-A04P-01A | TCGA-A2-A04P | PDE7A|TRIM55 | PDE7A | TRIM55 | 8 | 8 | -1 | 1 | 51 | 39 | 38 | 0.38 | 66753606 | 67061880 | tier1 | In-frame | 12513 | non-validated | 0.3645 |
| BRCA | TCGA-E2-A14R-01A | TCGA-E2-A14R | PDE7A|YPEL2 | PDE7A | YPEL2 | 8 | 17 | -1 | 1 | 2 | 1 | 1 | 0.005 | 66691955 | 57430576 | tier3 | CDS-5UTR | 12514 | NA | 0.34089 |
| LUAD | TCGA-95-A4VN-01A | TCGA-95-A4VN | PDE7A|NCAM2 | PDE7A | NCAM2 | 8 | 21 | -1 | 1 | 6 | 1 | 1 | 0.31 | 66750709 | 22582860 | tier3 | NA | 12509 | NA | 0.35767 |
| BRCA | TCGA-C8-A27A-01A | TCGA-C8-A27A | CPT1B|SEC14L3 | CPT1B | SEC14L3 | 22 | 22 | -1 | -1 | 6 | 1 | 1 | 0.9 | 51016204 | 30864683 | tier2 | In-frame | 4177 | NA | 0.34839 |
| LGG | TCGA-P5-A77W-01A | TCGA-P5-A77W | DPF3|TDP1 | DPF3 | TDP1 | 14 | 14 | -1 | 1 | 2 | 4 | 4 | 1.9 | 73219972 | 90437519 | tier2 | Out-of-frame | 5073 | NA | 0.35244 |
| LUAD | TCGA-49-4490-01A | TCGA-49-4490 | SERPINB5|CDH19 | SERPINB5 | CDH19 | 18 | 18 | 1 | -1 | 4 | 2 | 1 | 0.63 | 61151829 | 64178922 | tier2 | In-frame | 15667 | NA | 0 |
| SKCM | TCGA-EE-A2GD-06A | TCGA-EE-A2GD | HLA-A|KIFC3 | HLA-A | KIFC3 | 6 | 16 | 1 | -1 | 2 | 2 | 2 | 0.78 | 29913617 | 57805349 | tier3 | 3UTR-CDS | 7814 | NA | 0.37088 |
| KIRP | TCGA-5P-A9KC-01A | TCGA-5P-A9KC | GPX3|EIF2AK2 | GPX3 | EIF2AK2 | 5 | 2 | 1 | -1 | 2 | 19 | 14 | 2 | 150408554 | 37342384 | tier3 | NA | 7393 | NA | 0.38324 |
| THCA | TCGA-EM-A4FK-01A | TCGA-EM-A4FK | GPX3|CLCN3 | GPX3 | CLCN3 | 5 | 4 | 1 | 1 | 2 | 182 | 122 | 1.4 | 150408548 | 170623929 | tier3 | NA | 7392 | NA | 0.36461 |
| THCA | TCGA-DJ-A4V2-01A | TCGA-DJ-A4V2 | GPX3|CHD4 | GPX3 | CHD4 | 5 | 12 | 1 | -1 | 2 | 4 | 1 | 0.38 | 150408515 | 6710696 | tier3 | NA | 7390 | NA | 0.37464 |
| THCA | TCGA-FY-A3W9-01A | TCGA-FY-A3W9 | GPX3|CHD4 | GPX3 | CHD4 | 5 | 12 | 1 | -1 | 2 | 9 | 6 | 0.38 | 150408515 | 6710696 | tier3 | NA | 7391 | NA | 0.37464 |
| THCA | TCGA-BJ-A2N8-01A | TCGA-BJ-A2N8 | GPX3|SEC63 | GPX3 | SEC63 | 5 | 6 | 1 | -1 | 2 | 39 | 28 | 0.37 | 150408548 | 108214782 | tier3 | NA | 7394 | NA | 0.35113 |
| THCA | TCGA-EM-A22L-01A | TCGA-EM-A22L | GPX3|SEC63 | GPX3 | SEC63 | 5 | 6 | 1 | -1 | 2 | 22 | 13 | 0.37 | 150408548 | 108214782 | tier4 | NA | 7395 | NA | 0.35113 |
| HNSC | TCGA-TN-A7HJ-01A | TCGA-TN-A7HJ | GNRHR2|S100A13 | GNRHR2 | S100A13 | 1 | 1 | -1 | -1 | 9 | 8 | 8 | 0.22 | 145515189 | 153591514 | tier1 | In-frame | 7255 | NA | 0.35777 |
| STAD | TCGA-IP-7968-01A | TCGA-IP-7968 | STK38L|CCDC91 | STK38L | CCDC91 | 12 | 12 | 1 | 1 | 37 | 187 | 169 | 0.49 | 27462130 | 28603094 | tier1 | In-frame | 17085 | NA | 0 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | TMX2|C11orf80 | TMX2 | C11orf80 | 11 | 11 | 1 | 1 | 25 | 26 | 26 | 0.47 | 57480279 | 66563752 | tier1 | In-frame | 18322 | NA | 0 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | TMX2|IFT46 | TMX2 | IFT46 | 11 | 11 | 1 | -1 | 5 | 5 | 5 | 1.3 | 57480279 | 118435776 | tier1 | CDS-5UTR | 18323 | NA | 0 |
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